Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001867-TA|BGIBMGA001867-PA|IPR002482|Peptidoglycan-
binding LysM
(240 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0428 + 17842370-17842633,17842835-17842971,17843609-17844314 40 0.001
03_05_0806 + 27846204-27846497,27847309-27847683 40 0.002
03_01_0073 + 599626-599856,599960-600041,600646-600689,601303-60... 40 0.002
02_02_0443 + 10329823-10329951,10331169-10331234,10331298-103313... 31 1.1
02_01_0692 + 5179778-5181847 31 1.1
03_06_0650 - 35292062-35292079,35292365-35292955 30 1.5
04_03_0232 - 13049649-13052807 30 1.9
05_03_0425 - 13808840-13809414,13809552-13809765,13810268-138113... 29 2.5
07_03_0103 - 13425411-13425713,13425874-13425974,13426410-134264... 29 3.4
04_03_1002 - 21617339-21617362,21618476-21618565,21618755-216194... 29 4.4
04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093 29 4.4
11_06_0040 + 19532262-19532910,19533509-19533540 28 7.8
11_01_0467 + 3621266-3621401,3621531-3622699,3622815-3623128,362... 28 7.8
>10_08_0428 + 17842370-17842633,17842835-17842971,17843609-17844314
Length = 368
Score = 40.3 bits (90), Expect = 0.001
Identities = 14/39 (35%), Positives = 29/39 (74%)
Query: 46 DTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPV 84
DTL IA+++ +A++KR+N + D ++FA +T+++P+
Sbjct: 76 DTLAGIAIKYGVEVADIKRLNGLSTDLQMFAHKTLRIPL 114
>03_05_0806 + 27846204-27846497,27847309-27847683
Length = 222
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/49 (30%), Positives = 30/49 (61%)
Query: 42 VQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPVTPYSVL 90
V+ GDT+ IAL++ + ++KR N + D+ I+ R + +P++ +L
Sbjct: 82 VRRGDTVPGIALKYSIQVTDIKRFNNMMSDHGIYLRERLLIPISNPEIL 130
>03_01_0073 +
599626-599856,599960-600041,600646-600689,601303-601411,
601498-601964
Length = 310
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/48 (31%), Positives = 33/48 (68%)
Query: 37 FIEAQVQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPV 84
+I +V DTL +A+++ +A++KR+N + D ++FA +T+++P+
Sbjct: 56 YILHRVCRFDTLAGVAIKYGVEVADVKRVNGLTTDLQMFAHKTLRIPL 103
>02_02_0443 +
10329823-10329951,10331169-10331234,10331298-10331362,
10331534-10331666
Length = 130
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 108 QTPKSIQQLLQSNGIPQLHQSSLPQK--EEKDYAIDCNAVIMN-STLASSVAPYSD--VE 162
Q+ ++ QL++ + Q H + LP+K + A + V+ ++ SS+ Y D ++
Sbjct: 27 QSTSNLLQLMEESSPAQAHLAKLPKKLLAKASLAKNTGQVLHQLPSVISSLDAYMDASLQ 86
Query: 163 PAEQVTEDTQLLPNKEKIPVEAIV 186
A Q+ TQLL N E + +I+
Sbjct: 87 SASQIKTVTQLLSNMENNQLRSIL 110
>02_01_0692 + 5179778-5181847
Length = 689
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 35 EHFIEAQVQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPV 84
+H + V GDT+ AIA RF E+ N + + + I+ T+ VP+
Sbjct: 200 KHMVTYLVTWGDTVSAIAARFRVDAQEVLDANTLTESSIIYPFTTLLVPL 249
>03_06_0650 - 35292062-35292079,35292365-35292955
Length = 202
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 71 DNEIFARRTIKVPVTPYSVLTEL 93
++E FAR + V +TP S++TEL
Sbjct: 115 EHEFFARNNLSVDITPQSIMTEL 137
>04_03_0232 - 13049649-13052807
Length = 1052
Score = 29.9 bits (64), Expect = 1.9
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 117 LQSNGIPQLHQSSLPQKEEKDYAIDCNAVIMNSTLASSVAPYSDVEPAEQVTEDTQLLPN 176
L SN I ++H+ L + Y A + + ++ +SV VE E L P+
Sbjct: 158 LHSNDIREVHERKLAESNVSIY-----ADLSSDSILNSVRHLLQVEAEEVAFYSGVLEPD 212
Query: 177 -KEKIPVEAIVVKELTSHGADFGLKW 201
K+ +E I+ K L G D+G+ W
Sbjct: 213 MSTKLVMECILYKAL--RGDDYGINW 236
>05_03_0425 -
13808840-13809414,13809552-13809765,13810268-13811317,
13811616-13811687,13812075-13812334,13812647-13812731
Length = 751
Score = 29.5 bits (63), Expect = 2.5
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 11/86 (12%)
Query: 113 IQQLLQSNGI--PQLHQSSLPQKEEKDYAIDCNAVIMNSTLASSVAPYSDVEPAEQVTED 170
+Q+ Q G+ P+ H S E + + V++N+T S+ +S+ + AEQ +
Sbjct: 40 LQEYAQKAGLQTPEYHTSKEGPSHEPVFK---STVVINNTSYGSLPGFSNRKAAEQSAAE 96
Query: 171 TQL------LPNKEKIPVEAIVVKEL 190
L +P IP +VVKEL
Sbjct: 97 VALMEIVKSIPANANIPAVKLVVKEL 122
>07_03_0103 -
13425411-13425713,13425874-13425974,13426410-13426471,
13426951-13427123
Length = 212
Score = 29.1 bits (62), Expect = 3.4
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Query: 107 KQTPKSIQQLLQSNGIPQLHQSSLPQKEEKDYAIDCNAVIMNSTLASSVAPYSDVEPAEQ 166
K TP Q+L +S P HQ + EE + ++NS+ + PYS+ +
Sbjct: 85 KGTPTQQQKLAESILTPPEHQKKSTRAEESLALSPRSETVLNSSATTHTDPYSEGLAIPR 144
Query: 167 VTEDTQLLPNKEKIPVEAIVVKELTSHGAD 196
+D P+ + E + L GAD
Sbjct: 145 APDDIG-TPSIDLFTSEFPDIAALLDGGAD 173
>04_03_1002 - 21617339-21617362,21618476-21618565,21618755-21619432,
21619536-21619772,21619849-21619896,21619995-21620045,
21620301-21620426,21620557-21620697,21621165-21621401,
21622467-21622571,21622812-21622982,21623306-21623380,
21623754-21623936,21624151-21624297,21624365-21624472,
21624605-21624709,21625109-21625213,21625322-21625381,
21625512-21625579,21625876-21625954,21626208-21626267,
21626445-21626498,21626834-21626886,21627405-21627494,
21628265-21628362,21628464-21628852
Length = 1193
Score = 28.7 bits (61), Expect = 4.4
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
Query: 108 QTPKSIQQLLQSNGIPQLHQSSLPQKEEKD-YAIDCNAVIMNSTLASSVAPYSDVEPAEQ 166
++P Q LLQ+ I L L EEKD I + S+ A +A + VE
Sbjct: 920 ESPLKSQVLLQAAEIENLKLDKLRLAEEKDGLEIHSQKLAEESSYAKELAAAAAVELKNL 979
Query: 167 VTEDTQLLPNKEKIPVEAIVVKELT 191
E T+L K+ + K+ T
Sbjct: 980 AEEVTRLSYENAKLNADLAAAKDQT 1004
>04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093
Length = 1040
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/49 (24%), Positives = 25/49 (51%)
Query: 26 IQLYKIKPQEHFIEAQVQEGDTLQAIALRFYCSIAELKRINQIHKDNEI 74
+ L+++ + EA++ L+AI +R CS+ L + +H+ I
Sbjct: 926 VHLHELPSLKGICEAKIMSAPMLEAIMIRGCCSLRHLPDVQGLHEPRPI 974
>11_06_0040 + 19532262-19532910,19533509-19533540
Length = 226
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 41 QVQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPVTPYSVLTE 92
+V+ D + IA RF + L +IN I + + + VPV Y V T+
Sbjct: 172 KVRAADNVSKIAARFGVKESTLLKINGITDPKNLTQGQILDVPVPDYIVTTK 223
>11_01_0467 +
3621266-3621401,3621531-3622699,3622815-3623128,
3623276-3623937,3624040-3624401
Length = 880
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 138 YAIDCNAVIMNSTLASSVAPYSDVEPA-EQVTEDTQ-LLPNKEKIPVEAIVVKELTSHGA 195
YA C++ + + TLA + +DV A + + + Q + + + P + ++ +T+H
Sbjct: 665 YAPQCDSNLRHITLAQRIGIVADVADAMDYLHHNNQGTIVHCDLKPSKILLDDNMTAHVG 724
Query: 196 DFGLKWFH 203
DFGL F+
Sbjct: 725 DFGLVRFN 732
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.132 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,087,426
Number of Sequences: 37544
Number of extensions: 202471
Number of successful extensions: 542
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 534
Number of HSP's gapped (non-prelim): 13
length of query: 240
length of database: 14,793,348
effective HSP length: 80
effective length of query: 160
effective length of database: 11,789,828
effective search space: 1886372480
effective search space used: 1886372480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)
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