GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001867-TA|BGIBMGA001867-PA|IPR002482|Peptidoglycan-
binding LysM
         (240 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    29   0.12 
AJ304412-1|CAC39105.1|  196|Anopheles gambiae dynamin protein.         24   3.5  

>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 29.1 bits (62), Expect = 0.12
 Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 6/127 (4%)

Query: 65  INQIHKDNEIFARRTIKVPVTP-YSVLTELIXXXXXXXXXXXXKQTPKSIQQLLQSNGIP 123
           I ++  +  I  +R +  P  P  S L                KQ    + Q L  +   
Sbjct: 301 IEELENECRIAEQRQLASPTDPDISALDRQARHALKTAIRASKKQFFDRMLQALHDDETG 360

Query: 124 QLHQSSLPQKEEKDYAIDCNAVIMNSTLASSVAPYSDVEPAEQVTEDTQLLPNKEKIPVE 183
           Q  +  L + +    A D + V++ S +++    +SD  PAE  TED   + N  ++P+ 
Sbjct: 361 QCIRKVLYRLQPSRTAQDRDPVVLKSVVSTM---FSDHSPAEWPTEDKHEIGN--RVPLR 415

Query: 184 AIVVKEL 190
            +   EL
Sbjct: 416 EVTDLEL 422


>AJ304412-1|CAC39105.1|  196|Anopheles gambiae dynamin protein.
          Length = 196

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 12  VMNNKKNDDNGRSDIQLYKIKPQEHFIEAQVQEGDTLQAIALRFYCSIAELKRI 65
           ++NN K+  NG     LY    Q   +E    E    + + LR Y +  E  RI
Sbjct: 128 IINNTKDFINGELLAHLYATGDQASMMEESADEAQKREEM-LRMYHACKEALRI 180


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.315    0.132    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,350
Number of Sequences: 2123
Number of extensions: 7138
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 2
length of query: 240
length of database: 516,269
effective HSP length: 62
effective length of query: 178
effective length of database: 384,643
effective search space: 68466454
effective search space used: 68466454
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)