GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001867-TA|BGIBMGA001867-PA|IPR002482|Peptidoglycan-
binding LysM
         (240 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX537972-1|CAD97936.1|  345|Homo sapiens hypothetical protein pr...    66   1e-10
BC084545-1|AAH84545.1|  296|Homo sapiens LYSMD4 protein protein.       47   5e-05
BC033515-1|AAH33515.1|  215|Homo sapiens LysM, putative peptidog...    47   5e-05
AY125955-1|AAM94507.1|  215|Homo sapiens putative peptidoglycan ...    47   5e-05
BC031649-1|AAH31649.1|  227|Homo sapiens LysM, putative peptidog...    46   2e-04
AL592424-6|CAI16380.1|  227|Homo sapiens LysM, putative peptidog...    46   2e-04
BC041097-1|AAH41097.2|  297|Homo sapiens LysM, putative peptidog...    35   0.29 
BC058027-1|AAH58027.1|  127|Homo sapiens LYSMD3 protein protein.       30   6.3  

>BX537972-1|CAD97936.1|  345|Homo sapiens hypothetical protein
           protein.
          Length = 345

 Score = 66.1 bits (154), Expect = 1e-10
 Identities = 27/53 (50%), Positives = 41/53 (77%)

Query: 42  VQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPVTPYSVLTELI 94
           +QEGDTL AIAL++ C++A++KR+N +  D + FA R+IK+PV  +S LTE +
Sbjct: 108 IQEGDTLNAIALQYCCTVADIKRVNNLISDQDFFALRSIKIPVKKFSSLTETL 160


>BC084545-1|AAH84545.1|  296|Homo sapiens LYSMD4 protein protein.
          Length = 296

 Score = 47.2 bits (107), Expect = 5e-05
 Identities = 14/55 (25%), Positives = 39/55 (70%)

Query: 38  IEAQVQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPVTPYSVLTE 92
           ++ ++ + D+L  +AL++ C +A++K++N   ++ +++A +++K+PV  + +L E
Sbjct: 74  LQRELAQEDSLNKLALQYGCKVADIKKVNNFIREQDLYALKSVKIPVRNHGILME 128


>BC033515-1|AAH33515.1|  215|Homo sapiens LysM, putative
           peptidoglycan-binding, domain containing 2 protein.
          Length = 215

 Score = 47.2 bits (107), Expect = 5e-05
 Identities = 19/50 (38%), Positives = 36/50 (72%)

Query: 35  EHFIEAQVQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPV 84
           E  +E +V+ GDTLQ IAL++  ++ ++KR N++  ++ IF ++T+ +PV
Sbjct: 68  ERHVEHRVRAGDTLQGIALKYGVTMEQIKRANKLFTNDCIFLKKTLNIPV 117


>AY125955-1|AAM94507.1|  215|Homo sapiens putative peptidoglycan
           binding domain protein-like protein protein.
          Length = 215

 Score = 47.2 bits (107), Expect = 5e-05
 Identities = 19/50 (38%), Positives = 36/50 (72%)

Query: 35  EHFIEAQVQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPV 84
           E  +E +V+ GDTLQ IAL++  ++ ++KR N++  ++ IF ++T+ +PV
Sbjct: 68  ERHVEHRVRAGDTLQGIALKYGVTMEQIKRANKLFTNDCIFLKKTLNIPV 117


>BC031649-1|AAH31649.1|  227|Homo sapiens LysM, putative
          peptidoglycan-binding, domain containing 1 protein.
          Length = 227

 Score = 45.6 bits (103), Expect = 2e-04
 Identities = 16/51 (31%), Positives = 37/51 (72%)

Query: 34 QEHFIEAQVQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPV 84
          +E  +E Q++ GDTL  +AL++  ++ ++KR N+++ ++ IF ++T+ +P+
Sbjct: 36 RERRLEHQLEPGDTLAGLALKYGVTMEQIKRANRLYTNDSIFLKKTLYIPI 86


>AL592424-6|CAI16380.1|  227|Homo sapiens LysM, putative
          peptidoglycan-binding, domain containing 1 protein.
          Length = 227

 Score = 45.6 bits (103), Expect = 2e-04
 Identities = 16/51 (31%), Positives = 37/51 (72%)

Query: 34 QEHFIEAQVQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPV 84
          +E  +E Q++ GDTL  +AL++  ++ ++KR N+++ ++ IF ++T+ +P+
Sbjct: 36 RERRLEHQLEPGDTLAGLALKYGVTMEQIKRANRLYTNDSIFLKKTLYIPI 86


>BC041097-1|AAH41097.2|  297|Homo sapiens LysM, putative
           peptidoglycan-binding, domain containing 4 protein.
          Length = 297

 Score = 34.7 bits (76), Expect = 0.29
 Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 7/55 (12%)

Query: 45  GDTLQAIALRFYC-------SIAELKRINQIHKDNEIFARRTIKVPVTPYSVLTE 92
           GDT Q +   FY         +A++K++N   ++ +++A +++K+PV  + +L E
Sbjct: 75  GDTRQNLIPDFYAFRVINNGKVADIKKVNNFIREQDLYALKSVKIPVRNHGILME 129


>BC058027-1|AAH58027.1|  127|Homo sapiens LYSMD3 protein protein.
          Length = 127

 Score = 30.3 bits (65), Expect = 6.3
 Identities = 11/18 (61%), Positives = 16/18 (88%)

Query: 42 VQEGDTLQAIALRFYCSI 59
          +QEGDTL AIAL++ C++
Sbjct: 69 IQEGDTLNAIALQYCCTV 86


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.315    0.132    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,210,695
Number of Sequences: 224733
Number of extensions: 1009531
Number of successful extensions: 2221
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2210
Number of HSP's gapped (non-prelim): 11
length of query: 240
length of database: 73,234,838
effective HSP length: 88
effective length of query: 152
effective length of database: 53,458,334
effective search space: 8125666768
effective search space used: 8125666768
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 64 (29.9 bits)