GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001867-TA|BGIBMGA001867-PA|IPR002482|Peptidoglycan-
binding LysM
         (240 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79755-2|CAB02105.1|  179|Caenorhabditis elegans Hypothetical pr...    48   5e-06
AF000196-1|AAC24252.1|  158|Caenorhabditis elegans Hypothetical ...    43   2e-04
AC006757-4|AAF60545.1|  610|Caenorhabditis elegans Hypothetical ...    29   2.3  
U41109-17|AAO12426.1|  726|Caenorhabditis elegans Hypothetical p...    29   3.9  
U41109-15|AAZ91354.1|  819|Caenorhabditis elegans Hypothetical p...    29   3.9  
U41109-14|AAO12423.1|  840|Caenorhabditis elegans Hypothetical p...    29   3.9  
AF024502-1|AAK77624.1|  416|Caenorhabditis elegans Hypothetical ...    29   3.9  
AC087079-2|AAK27863.1|   67|Caenorhabditis elegans Hypothetical ...    29   3.9  
Z92793-2|CAD56589.1|  684|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z92793-1|CAB07229.1|  681|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z72503-11|CAD56560.1|  684|Caenorhabditis elegans Hypothetical p...    28   5.2  
Z72503-10|CAA96601.1|  681|Caenorhabditis elegans Hypothetical p...    28   5.2  
U46674-5|AAA85757.1|  708|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U21323-7|AAA62551.1|  465|Caenorhabditis elegans Hypothetical pr...    28   6.9  
AF024502-3|AAB70373.1|  836|Caenorhabditis elegans Hypothetical ...    27   9.1  

>Z79755-2|CAB02105.1|  179|Caenorhabditis elegans Hypothetical
          protein F43G9.2 protein.
          Length = 179

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 18/49 (36%), Positives = 34/49 (69%)

Query: 37 FIEAQVQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPVT 85
          FIE +V+ GDTL  +A+++  ++AE+KR+N +  + +  A   +K+PV+
Sbjct: 9  FIERKVKNGDTLNKLAIKYQVNVAEIKRVNNMVSEQDFMALSKVKIPVS 57


>AF000196-1|AAC24252.1|  158|Caenorhabditis elegans Hypothetical
          protein B0041.3 protein.
          Length = 158

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%)

Query: 22 GRSDIQLYKIKPQEHFIEAQVQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIK 81
          G +  Q   + P  + I  QVQ  DTL+ IAL+  CS++ L R N++   + +F ++ I+
Sbjct: 33 GTTQSQSSPVTPCSYTIY-QVQTDDTLERIALKHNCSVSSLVRANKLWSPSALFMKQFIR 91

Query: 82 VPV 84
          +P+
Sbjct: 92 IPI 94


>AC006757-4|AAF60545.1|  610|Caenorhabditis elegans Hypothetical
           protein Y40C7B.5 protein.
          Length = 610

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 7/72 (9%)

Query: 5   DDLISYDVMNNKKNDDNGRSDIQLYKIKPQEHFIEAQVQEGDTLQAIALRFYCSIAELKR 64
           D  I    MN+K+ND++ + ++ L    P+  + +  V+E  T Q     F+ +I  L  
Sbjct: 395 DSTIILKNMNHKENDNSKKINLLL----PKHLYKKDGVKENRTEQD---NFFRNIYVLSS 447

Query: 65  INQIHKDNEIFA 76
           +N I  D+EIF+
Sbjct: 448 MNTIQSDSEIFS 459


>U41109-17|AAO12426.1|  726|Caenorhabditis elegans Hypothetical
          protein F52E1.13d protein.
          Length = 726

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 42 VQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPV 84
          + E DTL+ +A    C++ EL ++N++     +F  + I VP+
Sbjct: 26 ITETDTLERVAASHDCTVGELMKLNKM-ASRMVFPGQKILVPL 67


>U41109-15|AAZ91354.1|  819|Caenorhabditis elegans Hypothetical
          protein F52E1.13c protein.
          Length = 819

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 42 VQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPV 84
          + E DTL+ +A    C++ EL ++N++     +F  + I VP+
Sbjct: 5  ITETDTLERVAASHDCTVGELMKLNKM-ASRMVFPGQKILVPL 46


>U41109-14|AAO12423.1|  840|Caenorhabditis elegans Hypothetical
          protein F52E1.13a protein.
          Length = 840

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 42 VQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPV 84
          + E DTL+ +A    C++ EL ++N++     +F  + I VP+
Sbjct: 26 ITETDTLERVAASHDCTVGELMKLNKM-ASRMVFPGQKILVPL 67


>AF024502-1|AAK77624.1|  416|Caenorhabditis elegans Hypothetical
           protein M151.7 protein.
          Length = 416

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 4/102 (3%)

Query: 81  KVPVTPYSVLTELIXXXXXXXXXXXXKQTPKSIQQLLQSNGIPQLH----QSSLPQKEEK 136
           K+P +P +     +            K  PKS +QL   N   +L     +S L QK+ K
Sbjct: 167 KLPESPQNSAPPPLELEQPEPARALLKSAPKSYEQLAAENSAMKLELAFLKSELEQKDNK 226

Query: 137 DYAIDCNAVIMNSTLASSVAPYSDVEPAEQVTEDTQLLPNKE 178
              +    VI+     +++A   D+    +  ED     +KE
Sbjct: 227 ILVVVAENVILREEWDANIAIKQDLRVKLKDLEDKFAQKSKE 268


>AC087079-2|AAK27863.1|   67|Caenorhabditis elegans Hypothetical
          protein Y37E3.3 protein.
          Length = 67

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 37 FIEAQVQEGDTLQAIALRFYC 57
          F++++  EGD L A+ LR YC
Sbjct: 24 FLQSEYSEGDALDALGLRRYC 44


>Z92793-2|CAD56589.1|  684|Caenorhabditis elegans Hypothetical
           protein C26C6.5b protein.
          Length = 684

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 113 IQQLLQS--NGIPQLHQSSLPQKEEKDYAIDCNAVIMNSTLASSVAPYSDVEPAEQV--T 168
           +QQ+  S  NGIP+ + + L  +E    A+   A I N  +     P  D+  A     T
Sbjct: 4   VQQVPSSPMNGIPEKNGNGLSIEESASTAVAALAHIQNGAVLFHGTPTKDLNGASTSIDT 63

Query: 169 EDTQLLPN 176
           +D QL P+
Sbjct: 64  DDLQLSPS 71


>Z92793-1|CAB07229.1|  681|Caenorhabditis elegans Hypothetical
           protein C26C6.5a protein.
          Length = 681

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 113 IQQLLQS--NGIPQLHQSSLPQKEEKDYAIDCNAVIMNSTLASSVAPYSDVEPAEQV--T 168
           +QQ+  S  NGIP+ + + L  +E    A+   A I N  +     P  D+  A     T
Sbjct: 4   VQQVPSSPMNGIPEKNGNGLSIEESASTAVAALAHIQNGAVLFHGTPTKDLNGASTSIDT 63

Query: 169 EDTQLLPN 176
           +D QL P+
Sbjct: 64  DDLQLSPS 71


>Z72503-11|CAD56560.1|  684|Caenorhabditis elegans Hypothetical
           protein C26C6.5b protein.
          Length = 684

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 113 IQQLLQS--NGIPQLHQSSLPQKEEKDYAIDCNAVIMNSTLASSVAPYSDVEPAEQV--T 168
           +QQ+  S  NGIP+ + + L  +E    A+   A I N  +     P  D+  A     T
Sbjct: 4   VQQVPSSPMNGIPEKNGNGLSIEESASTAVAALAHIQNGAVLFHGTPTKDLNGASTSIDT 63

Query: 169 EDTQLLPN 176
           +D QL P+
Sbjct: 64  DDLQLSPS 71


>Z72503-10|CAA96601.1|  681|Caenorhabditis elegans Hypothetical
           protein C26C6.5a protein.
          Length = 681

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 113 IQQLLQS--NGIPQLHQSSLPQKEEKDYAIDCNAVIMNSTLASSVAPYSDVEPAEQV--T 168
           +QQ+  S  NGIP+ + + L  +E    A+   A I N  +     P  D+  A     T
Sbjct: 4   VQQVPSSPMNGIPEKNGNGLSIEESASTAVAALAHIQNGAVLFHGTPTKDLNGASTSIDT 63

Query: 169 EDTQLLPN 176
           +D QL P+
Sbjct: 64  DDLQLSPS 71


>U46674-5|AAA85757.1|  708|Caenorhabditis elegans Hypothetical
           protein T26A8.1 protein.
          Length = 708

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 18/40 (45%), Positives = 22/40 (55%)

Query: 144 AVIMNSTLASSVAPYSDVEPAEQVTEDTQLLPNKEKIPVE 183
           AVI NST A++V   S V+  E  T   Q L  K +I VE
Sbjct: 256 AVIDNSTQAANVTDDSIVKKPEVATGTVQKLKTKTEINVE 295


>U21323-7|AAA62551.1|  465|Caenorhabditis elegans Hypothetical
           protein C45G9.8 protein.
          Length = 465

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 14  NNKKNDDNGRSDIQL-YKIKPQEHFIEAQVQEGDT 47
           N  K+DD G+SD  L + I+ QE FI ++    +T
Sbjct: 414 NESKSDDEGKSDKSLSFVIEKQEEFIYSRANPIET 448


>AF024502-3|AAB70373.1|  836|Caenorhabditis elegans Hypothetical
           protein M151.3 protein.
          Length = 836

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 4/102 (3%)

Query: 81  KVPVTPYSVLTELIXXXXXXXXXXXXKQTPKSIQQLLQSNGIPQLH----QSSLPQKEEK 136
           K+P +P +     +            K  PKS +QL   N   +L     +  L QK++K
Sbjct: 626 KLPESPQNSAPPPLELEQPEPARALLKSAPKSYEQLTAENSAMKLELAFLKRELEQKDDK 685

Query: 137 DYAIDCNAVIMNSTLASSVAPYSDVEPAEQVTEDTQLLPNKE 178
              +    VI+     +++A   D+       ED     +KE
Sbjct: 686 ILVVVAENVILREEWDANIAIKQDLRAKLNDLEDKFAQKSKE 727


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.315    0.132    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,430,682
Number of Sequences: 27539
Number of extensions: 192234
Number of successful extensions: 587
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 583
Number of HSP's gapped (non-prelim): 15
length of query: 240
length of database: 12,573,161
effective HSP length: 79
effective length of query: 161
effective length of database: 10,397,580
effective search space: 1674010380
effective search space used: 1674010380
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)