GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001867-TA|BGIBMGA001867-PA|IPR002482|Peptidoglycan-
binding LysM
         (240 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    26   0.27 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    26   0.27 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   5.8  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   5.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.8  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 10/41 (24%), Positives = 23/41 (56%)

Query: 4   GDDLISYDVMNNKKNDDNGRSDIQLYKIKPQEHFIEAQVQE 44
           GD L  Y+++N +K++ NG +  Q   +    + ++ + +E
Sbjct: 394 GDGLARYEILNFRKSEHNGTNGYQYQVVGKWFNSLDIRTEE 434


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 10/41 (24%), Positives = 23/41 (56%)

Query: 4   GDDLISYDVMNNKKNDDNGRSDIQLYKIKPQEHFIEAQVQE 44
           GD L  Y+++N +K++ NG +  Q   +    + ++ + +E
Sbjct: 484 GDGLARYEILNFRKSEHNGTNGYQYQVVGKWFNSLDIRTEE 524


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 165 EQVTEDTQLLPNKE-KIPVEAIVVKELTSHGAD 196
           +QV ED +L PNK+ +I  E   VK +   G +
Sbjct: 251 DQVLEDGKLKPNKKVRISNEMSKVKVIDMTGPE 283


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/41 (19%), Positives = 20/41 (48%)

Query: 34  QEHFIEAQVQEGDTLQAIALRFYCSIAELKRINQIHKDNEI 74
           Q   ++   Q  +TLQ +       + +  ++N++H+ N +
Sbjct: 338 QRENMDMVAQNEETLQTVVAMKMMHLPQSNKMNRMHRMNRV 378


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/40 (27%), Positives = 19/40 (47%)

Query: 107  KQTPKSIQQLLQSNGIPQLHQSSLPQKEEKDYAIDCNAVI 146
            +Q+ +  QQ  Q     Q  Q   PQ+++K+Y      V+
Sbjct: 1519 QQSQQPQQQQPQPQQQQQQQQQQQPQQQQKEYGAVSGLVV 1558


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.132    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,678
Number of Sequences: 429
Number of extensions: 2017
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 5
length of query: 240
length of database: 140,377
effective HSP length: 56
effective length of query: 184
effective length of database: 116,353
effective search space: 21408952
effective search space used: 21408952
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 43 (21.4 bits)