GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001867-TA|BGIBMGA001867-PA|IPR002482|Peptidoglycan-
binding LysM
         (240 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08200.1 68418.m00959 peptidoglycan-binding LysM domain-conta...    42   4e-04
At5g23130.1 68418.m02705 peptidoglycan-binding LysM domain-conta...    38   0.006
At1g55000.1 68414.m06282 peptidoglycan-binding LysM domain-conta...    36   0.019
At5g06710.2 68418.m00759 homeobox-leucine zipper protein 14 (HAT...    29   2.8  
At1g61470.1 68414.m06926 CCR4-NOT transcription complex protein,...    28   6.5  
At3g56760.1 68416.m06313 calcium-dependent protein kinase, putat...    27   8.6  

>At5g08200.1 68418.m00959 peptidoglycan-binding LysM
           domain-containing protein contains Pfam profile PF01476:
           LysM domain
          Length = 409

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 14/52 (26%), Positives = 36/52 (69%)

Query: 33  PQEHFIEAQVQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPV 84
           P   +IE ++ + DTL  +A+++   +A++K++N +  D ++FA +++++P+
Sbjct: 73  PDRGYIEHRISKFDTLAGVAIKYGVEVADVKKMNNLVTDLQMFALKSLQIPL 124


>At5g23130.1 68418.m02705 peptidoglycan-binding LysM
           domain-containing protein contains Pfam profile PF01476:
           LysM domain
          Length = 397

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 14/48 (29%), Positives = 33/48 (68%)

Query: 37  FIEAQVQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPV 84
           +IE +V + DTL  IA+++   +A++ ++N +  D ++FA  ++++P+
Sbjct: 69  YIEHRVSKFDTLAGIAIKYGVEVADITKLNGLVTDLQMFALESLRIPL 116


>At1g55000.1 68414.m06282 peptidoglycan-binding LysM
           domain-containing protein contains Pfam profile PF01476:
           LysM domain
          Length = 221

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 12/53 (22%), Positives = 34/53 (64%)

Query: 38  IEAQVQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPVTPYSVL 90
           I  ++  GD++ ++A+++   + ++KR+N +  D+ I++R  + +P++   +L
Sbjct: 74  ISHRICRGDSVTSLAVKYAVQVMDIKRLNNMMSDHGIYSRDRLLIPISNPEIL 126


>At5g06710.2 68418.m00759 homeobox-leucine zipper protein 14 (HAT14)
           / HD-ZIP protein 14 contains similarity to homeodomain
           leucine zipper protein
          Length = 237

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/50 (30%), Positives = 24/50 (48%)

Query: 14  NNKKNDDNGRSDIQLYKIKPQEHFIEAQVQEGDTLQAIALRFYCSIAELK 63
           N   +D+NG +  +L   K Q  F+E   +E  TL  + + F+     LK
Sbjct: 178 NEDNDDENGSTRKKLRLSKDQSAFLEDSFKEHSTLNPVRVPFFTVFIYLK 227


>At1g61470.1 68414.m06926 CCR4-NOT transcription complex protein,
           putative similar to SWISS-PROT:Q60809 CCR4-NOT
           transcription complex, subunit 7 (CCR4-associated factor
           1, (CAF1) [Mus musculus]
          Length = 278

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 9/27 (33%), Positives = 19/27 (70%)

Query: 10  YDVMNNKKNDDNGRSDIQLYKIKPQEH 36
           +D++N++K     R+D Q Y+++ Q+H
Sbjct: 230 FDLVNSRKESTGRRADDQQYQLEQQQH 256


>At3g56760.1 68416.m06313 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium/calmodulin-dependent
           protein kinase CaMK3 [Nicotiana tabacum]
           gi|16904226|gb|AAL30820
          Length = 577

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 107 KQTPKSIQQLLQSNGIPQLHQSSLPQKEEKDYAIDCNAVIMNSTLASSVAPYSDVEPAEQ 166
           ++TPK+  Q  +S+G P    S LP   +   A+  ++V  ++ L     P+    PA+ 
Sbjct: 23  EETPKNSSQKAKSSGFPFYSPSPLPSLFKTSPAVSSSSV-SSTPLRIFKRPFPPPSPAKH 81

Query: 167 V 167
           +
Sbjct: 82  I 82


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.132    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,099,254
Number of Sequences: 28952
Number of extensions: 175791
Number of successful extensions: 424
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 419
Number of HSP's gapped (non-prelim): 6
length of query: 240
length of database: 12,070,560
effective HSP length: 79
effective length of query: 161
effective length of database: 9,783,352
effective search space: 1575119672
effective search space used: 1575119672
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)