GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001866-TA|BGIBMGA001866-PA|IPR006020|Phosphotyrosine
interaction region
         (1322 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    26   1.5  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    26   1.5  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    25   4.5  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    25   4.5  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    25   4.5  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    24   6.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   7.9  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   7.9  

>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 756 SPRDSNGTVEIKLEDSSDRYAALREITITEPPDEFESLPPEIPKERKKSDEKSDGFDNSD 815
           +P+      E +L DS        ++T T PP +     PE   E KKS EK     N+ 
Sbjct: 36  APKSPENHPETELSDSDCDL----DVTGTPPPLDCSKNSPEKESEEKKSKEKPPYSYNAL 91

Query: 816 FFDCIDNS 823
               I NS
Sbjct: 92  IMMAIRNS 99


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 872 STGSISDVVSGSSPDTKVQTSSSSRDVSPWDEDLPPVTRLPRPPSH 917
           S+G  S +  G S   + +T      +S    ++PP+T  P PPSH
Sbjct: 84  SSGPFSSIGGGISASKRQRTDDW---LSSPSGNVPPLTPSPGPPSH 126


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 10/48 (20%), Positives = 23/48 (47%)

Query: 725 VSPKPSQIEAKIEDIKSVMKSLQIDKTRGSVSPRDSNGTVEIKLEDSS 772
           ++ K + +  K+E+ ++   S +       +SP++S     +KL   S
Sbjct: 179 ITKKANSVSVKVENRRNSPNSCEKKIGLSKISPKESQDAANVKLSPKS 226


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 10/48 (20%), Positives = 23/48 (47%)

Query: 725 VSPKPSQIEAKIEDIKSVMKSLQIDKTRGSVSPRDSNGTVEIKLEDSS 772
           ++ K + +  K+E+ ++   S +       +SP++S     +KL   S
Sbjct: 127 ITKKANSVSVKVENRRNSPNSCEKKIGLSKISPKESQDAANVKLSPKS 174


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 10/48 (20%), Positives = 23/48 (47%)

Query: 725 VSPKPSQIEAKIEDIKSVMKSLQIDKTRGSVSPRDSNGTVEIKLEDSS 772
           ++ K + +  K+E+ ++   S +       +SP++S     +KL   S
Sbjct: 310 ITKKANSVSVKVENRRNSPNSCEKKIGLSKISPKESQDAANVKLSPKS 357


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 7/81 (8%)

Query: 660 KAKSILDPSDGEIDNKTDSDCKELTAIDDLIKSKQDREETKELSKSPLKSLDELTLDSFN 719
           K KSI    +     K  S  K   + +D I+ ++     +E  ++  +SL+E    +F 
Sbjct: 65  KRKSISSDEENSFQGKHKSRRKAPQSFED-IQHQRVMANVRERQRT--QSLNE----AFA 117

Query: 720 MFRKSVSPKPSQIEAKIEDIK 740
             RKS+   PS   +KI+ +K
Sbjct: 118 SLRKSIPTMPSDKLSKIQTLK 138


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 603 PSAPEASTDFKPQFEDDFAPSTETNGTFVANFDDFDKKA 641
           P   E   D++P F+  + PS +T  T V  F D   +A
Sbjct: 90  PPPDEPIDDYEPSFDLFYYPSRQTLYTPVQYFKDLVAEA 128


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 13/37 (35%), Positives = 17/37 (45%)

Query: 1164 RDRDSPFDNDFQETPTPTTKKRAPYASLEGTRFVFES 1200
            R+  SP  +D   TP  T   R P  SL     +F+S
Sbjct: 932  RNSASPASSDRSGTPRSTNGDRKPGGSLGALSSMFDS 968


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.312    0.130    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 265,017
Number of Sequences: 317
Number of extensions: 11343
Number of successful extensions: 24
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 9
length of query: 1322
length of database: 114,650
effective HSP length: 65
effective length of query: 1257
effective length of database: 94,045
effective search space: 118214565
effective search space used: 118214565
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 49 (23.8 bits)