Silkworm BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001865-TA|BGIBMGA001865-PA|IPR008089|Nucleotide sugar
epimerase, IPR005886|UDP-glucose 4-epimerase, IPR001509|NAD-dependent
epimerase/dehydratase
         (234 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99709-12|CAI79146.1|  349|Caenorhabditis elegans Hypothetical p...   263   9e-71
Z99709-11|CAB16861.1|  347|Caenorhabditis elegans Hypothetical p...   263   9e-71
U40800-3|AAA81490.1|  467|Caenorhabditis elegans Squashed vulva ...    33   0.13 
AY147933-1|AAN39843.1|  467|Caenorhabditis elegans UDP-glucuroni...    33   0.13 
U00056-2|AAN65309.2|  187|Caenorhabditis elegans Hypothetical pr...    31   0.54 
U00055-3|AAA50723.3|  693|Caenorhabditis elegans Hypothetical pr...    31   0.54 
Z46793-1|CAA86770.1|  367|Caenorhabditis elegans Hypothetical pr...    31   0.94 
U80441-1|AAB37651.1|  647|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AF003139-7|AAB54162.2|  512|Caenorhabditis elegans Defective spe...    28   6.6  
Z82282-10|CAB05277.2|  600|Caenorhabditis elegans Hypothetical p...    27   8.8  
Z81092-2|CAB03145.2|  702|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AF100305-2|AAC68917.1|  320|Caenorhabditis elegans Hypothetical ...    27   8.8  

>Z99709-12|CAI79146.1|  349|Caenorhabditis elegans Hypothetical
           protein C47B2.6b protein.
          Length = 349

 Score =  263 bits (644), Expect = 9e-71
 Identities = 118/220 (53%), Positives = 161/220 (73%), Gaps = 2/220 (0%)

Query: 2   VFSSSCTVYGEPEHLPITETHPTGS-ITNVYGRTKYFIEEMLKDLSAADDKWNIISLRYF 60
           VFSSS TVYG P  LPITE   TG  ITN YG+TKY +E++L D+  A+ +WN++ LRYF
Sbjct: 128 VFSSSATVYGPPSELPITEKSQTGQGITNPYGQTKYMMEQILIDVGKANPEWNVVLLRYF 187

Query: 61  NPVGAHPSGLIGEDPTKEFTNLMPFLAQVALGKKPVLTVFGTDYNTPDGTGIRDYIHVMD 120
           NPVGAH SGLIGEDP     NLMP+++QVA+GK PVLT++G  ++T DGTG+RDYIHV+D
Sbjct: 188 NPVGAHKSGLIGEDPKGVPNNLMPYVSQVAIGKLPVLTIYGDQFDTVDGTGVRDYIHVVD 247

Query: 121 LASGHVAALNLLSQT-HIRLKVYNLGTGKGVSVKELVNVFERVTKAKVPLKYVDRRLGDI 179
           LA GHV A + +    +I  ++YNLGTG G SV+++V+  ++V+   +P+K    R GD+
Sbjct: 248 LAKGHVKAFDRIKTVGNIGTEIYNLGTGVGYSVRQMVDALKKVSGRDIPVKIGVPRPGDV 307

Query: 180 SAMWADTSLAKEELGWSTQLTIEEMCTDFWRWQTMNPDGY 219
           ++++ D SLA+E+LGW  +  +EEMC D W WQT NP G+
Sbjct: 308 ASVYCDPSLAQEKLGWRAETGLEEMCADLWNWQTKNPQGF 347


>Z99709-11|CAB16861.1|  347|Caenorhabditis elegans Hypothetical
           protein C47B2.6a protein.
          Length = 347

 Score =  263 bits (644), Expect = 9e-71
 Identities = 118/220 (53%), Positives = 161/220 (73%), Gaps = 2/220 (0%)

Query: 2   VFSSSCTVYGEPEHLPITETHPTGS-ITNVYGRTKYFIEEMLKDLSAADDKWNIISLRYF 60
           VFSSS TVYG P  LPITE   TG  ITN YG+TKY +E++L D+  A+ +WN++ LRYF
Sbjct: 126 VFSSSATVYGPPSELPITEKSQTGQGITNPYGQTKYMMEQILIDVGKANPEWNVVLLRYF 185

Query: 61  NPVGAHPSGLIGEDPTKEFTNLMPFLAQVALGKKPVLTVFGTDYNTPDGTGIRDYIHVMD 120
           NPVGAH SGLIGEDP     NLMP+++QVA+GK PVLT++G  ++T DGTG+RDYIHV+D
Sbjct: 186 NPVGAHKSGLIGEDPKGVPNNLMPYVSQVAIGKLPVLTIYGDQFDTVDGTGVRDYIHVVD 245

Query: 121 LASGHVAALNLLSQT-HIRLKVYNLGTGKGVSVKELVNVFERVTKAKVPLKYVDRRLGDI 179
           LA GHV A + +    +I  ++YNLGTG G SV+++V+  ++V+   +P+K    R GD+
Sbjct: 246 LAKGHVKAFDRIKTVGNIGTEIYNLGTGVGYSVRQMVDALKKVSGRDIPVKIGVPRPGDV 305

Query: 180 SAMWADTSLAKEELGWSTQLTIEEMCTDFWRWQTMNPDGY 219
           ++++ D SLA+E+LGW  +  +EEMC D W WQT NP G+
Sbjct: 306 ASVYCDPSLAQEKLGWRAETGLEEMCADLWNWQTKNPQGF 345


>U40800-3|AAA81490.1|  467|Caenorhabditis elegans Squashed vulva
           protein 1 protein.
          Length = 467

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 48/208 (23%), Positives = 95/208 (45%), Gaps = 26/208 (12%)

Query: 1   MVFSSSCTVYGEPEHLPITETHPTGSITNVYGRTKYFI-EEMLKDLSAADDKWNIISL-- 57
           ++ +S+  VYG+PE  P  ET+  G +  +  R  Y   + + + L  A +K   I +  
Sbjct: 245 VLLASTSEVYGDPEVHPQPETY-WGHVNTIGPRACYDEGKRVAESLMVAYNKQENIKIRI 303

Query: 58  -RYFNPVGAHPSGLIGEDPTKEFTNLMPFLAQVALGKKPVLTVFGTDYNTPDGTGIRDYI 116
            R FN  G      +  +  +  +N   F+ Q AL  KP+ T++G      +GT  R + 
Sbjct: 304 ARIFNTFGPR----MHMNDGRVVSN---FIIQ-ALQDKPI-TIYG------NGTQTRSFQ 348

Query: 117 HVMDLASGHVAALNLLSQTHIRLKVYNLGTGKGVSVKELVNVF-ERVTKAKVPLKYVDRR 175
           +V DL  G +  +N    ++  L V N+G  +  ++ +   +  + V  +   +  ++ +
Sbjct: 349 YVTDLVDGLIKLMN----SNYSLPV-NIGNPEEHTIGQFATIIRDLVPGSTSEIVNLESQ 403

Query: 176 LGDISAMWADTSLAKEELGWSTQLTIEE 203
             D      D   A E++ W+ Q+ +++
Sbjct: 404 QDDPQQRRPDIRRAAEQISWAPQVHMKD 431


>AY147933-1|AAN39843.1|  467|Caenorhabditis elegans UDP-glucuronic
           acid decarboxylase protein.
          Length = 467

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 48/208 (23%), Positives = 95/208 (45%), Gaps = 26/208 (12%)

Query: 1   MVFSSSCTVYGEPEHLPITETHPTGSITNVYGRTKYFI-EEMLKDLSAADDKWNIISL-- 57
           ++ +S+  VYG+PE  P  ET+  G +  +  R  Y   + + + L  A +K   I +  
Sbjct: 245 VLLASTSEVYGDPEVHPQPETY-WGHVNTIGPRACYDEGKRVAESLMVAYNKQENIKIRI 303

Query: 58  -RYFNPVGAHPSGLIGEDPTKEFTNLMPFLAQVALGKKPVLTVFGTDYNTPDGTGIRDYI 116
            R FN  G      +  +  +  +N   F+ Q AL  KP+ T++G      +GT  R + 
Sbjct: 304 ARIFNTFGPR----MHMNDGRVVSN---FIIQ-ALQDKPI-TIYG------NGTQTRSFQ 348

Query: 117 HVMDLASGHVAALNLLSQTHIRLKVYNLGTGKGVSVKELVNVF-ERVTKAKVPLKYVDRR 175
           +V DL  G +  +N    ++  L V N+G  +  ++ +   +  + V  +   +  ++ +
Sbjct: 349 YVTDLVDGLIKLMN----SNYSLPV-NIGNPEEHTIGQFATIIRDLVPGSTSEIVNLESQ 403

Query: 176 LGDISAMWADTSLAKEELGWSTQLTIEE 203
             D      D   A E++ W+ Q+ +++
Sbjct: 404 QDDPQQRRPDIRRAAEQISWAPQVHMKD 431


>U00056-2|AAN65309.2|  187|Caenorhabditis elegans Hypothetical
           protein R05H11.2 protein.
          Length = 187

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 14/42 (33%), Positives = 22/42 (52%)

Query: 3   FSSSCTVYGEPEHLPITETHPTGSITNVYGRTKYFIEEMLKD 44
           +S   +V G P    +T + P  +  N+Y R K +I E+ KD
Sbjct: 68  YSDCSSVSGSPSSSTMTSSPPPQNFFNIYDRLKEYISEVPKD 109


>U00055-3|AAA50723.3|  693|Caenorhabditis elegans Hypothetical
           protein R02F2.7 protein.
          Length = 693

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 13/46 (28%), Positives = 25/46 (54%)

Query: 147 GKGVSVKELVNVFERVTKAKVPLKYVDRRLGDISAMWADTSLAKEE 192
           GKG   + ++ VF++V +   P+K+V+R   D++    +   A  E
Sbjct: 409 GKGSENENILKVFKKVAQEAAPVKFVNRTAADVAEKLREPEFAVAE 454


>Z46793-1|CAA86770.1|  367|Caenorhabditis elegans Hypothetical
           protein C56G7.2 protein.
          Length = 367

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 11/80 (13%)

Query: 30  VYGRTKYFIEEMLKDLSAADDKWNIISLRYF--NPVGAHPSG------LIGEDPTKEFTN 81
           V G+  +  EE+LKDL   DD +  ++ R++      A+PSG       +G    K  T 
Sbjct: 285 VKGKMMFNREEVLKDLDVQDDAYRSLNTRWYVARRSRANPSGNGCARKKMGSLRPK-LTE 343

Query: 82  LMPFLAQVALGKKPVLTVFG 101
           L PF   +  G   +L VFG
Sbjct: 344 LWPFKVYIIFGS--ILIVFG 361


>U80441-1|AAB37651.1|  647|Caenorhabditis elegans Hypothetical
           protein F27C1.6 protein.
          Length = 647

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 163 TKAKVPLKYVDRRLGDISAMWADTSLAKEELGWSTQLTIEEMCTDFWRWQTMNPDGYPKK 222
           +K  +PLK V+ R  +I    A T L KE     T+L      +D   +    PDG    
Sbjct: 93  SKTLIPLKDVEARK-EIEGKIAFTDLKKEVTQNWTELVQSNRVSDQLIFPLTKPDGIMWG 151

Query: 223 TKKTEIVVNGK 233
            +KTE V+  K
Sbjct: 152 DEKTEPVLTEK 162


>AF003139-7|AAB54162.2|  512|Caenorhabditis elegans Defective
           spermatogenesis protein 8 protein.
          Length = 512

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 114 DYIHVMDLASGHVAALNLLSQTHIRLKVYNLGTG-KGVSVKE 154
           DY+H   +    +AA N L  +   LK+ + G   KGV++KE
Sbjct: 333 DYLHGKQVIHRDIAARNCLLNSKKILKISDFGLSVKGVAIKE 374


>Z82282-10|CAB05277.2|  600|Caenorhabditis elegans Hypothetical
           protein T07G12.6 protein.
          Length = 600

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 87  AQVALGKKPVLTVFGTDYNTPDGTGIRDYIHVMDLASGH 125
           + +A   KPVLTV  +D    +   I D+  V++L++ H
Sbjct: 342 SSIAEDVKPVLTVSDSDITASNRNNIDDHNRVIELSTEH 380


>Z81092-2|CAB03145.2|  702|Caenorhabditis elegans Hypothetical
           protein F58D12.3 protein.
          Length = 702

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/27 (33%), Positives = 20/27 (74%)

Query: 33  RTKYFIEEMLKDLSAADDKWNIISLRY 59
           +++ ++ E++KD+SA  +K N + L+Y
Sbjct: 541 KSELYLNELIKDVSALMEKLNTVPLKY 567


>AF100305-2|AAC68917.1|  320|Caenorhabditis elegans Hypothetical
           protein W04B5.5 protein.
          Length = 320

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 10  YGEPEHLPITETHPTGSITNVYGRTKYFIEEML--KDLSAADDKWNIISLRYFNPVGAHP 67
           Y + +  P+ E  PTG  ++  G   +   E+L   ++S + D W      Y    G +P
Sbjct: 188 YQKIQENPVEEEQPTGRRSSFVGTAFFVTPELLTGSEMSPSSDLWAFSVTLYLFLTGIYP 247


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.134    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,139,467
Number of Sequences: 27539
Number of extensions: 256368
Number of successful extensions: 637
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 627
Number of HSP's gapped (non-prelim): 13
length of query: 234
length of database: 12,573,161
effective HSP length: 79
effective length of query: 155
effective length of database: 10,397,580
effective search space: 1611624900
effective search space used: 1611624900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)