GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001865-TA|BGIBMGA001865-PA|IPR008089|Nucleotide sugar
epimerase, IPR005886|UDP-glucose 4-epimerase, IPR001509|NAD-dependent
epimerase/dehydratase
         (234 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...   223   2e-59
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb...   214   8e-57
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    29   0.58 
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    27   2.4  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    26   5.4  
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po...    25   9.5  

>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score =  223 bits (545), Expect = 2e-59
 Identities = 111/226 (49%), Positives = 148/226 (65%), Gaps = 8/226 (3%)

Query: 1   MVFSSSCTVYGEPEH----LPITETHPTGSITNVYGRTKYFIEEMLKDLSAADDKWNIIS 56
           +VFSSS TVYG+       +PI E+ P    TN YG+TKY IE ++KDL  +D+ W    
Sbjct: 124 VVFSSSATVYGDATRFDNMIPIPESCPNDP-TNPYGKTKYAIENIIKDLHTSDNTWRGAI 182

Query: 57  LRYFNPVGAHPSGLIGEDPTKEFTNLMPFLAQVALGKKPVLTVFGTDYNTPDGTGIRDYI 116
           LRYFNP+GAHPSGL+GEDP     NL+PFLAQVA+G++  L VFG DY++ DGT IRDYI
Sbjct: 183 LRYFNPIGAHPSGLLGEDPLGIPNNLLPFLAQVAIGRREKLLVFGDDYDSHDGTPIRDYI 242

Query: 117 HVMDLASGHVAALNLLSQTHIRLKVY---NLGTGKGVSVKELVNVFERVTKAKVPLKYVD 173
           HV+DLA GH+AALN L++ +    +Y   NLGTGKG SV ++ + F +     +P + V 
Sbjct: 243 HVVDLAKGHIAALNYLNKINNSEGMYREWNLGTGKGSSVFDIYHAFCKEVGKDLPYEVVG 302

Query: 174 RRLGDISAMWADTSLAKEELGWSTQLTIEEMCTDFWRWQTMNPDGY 219
           RR GD+  + A  + A  EL W  +L+I + C D W+W   NP G+
Sbjct: 303 RRTGDVLNLTASPNRANSELKWKAELSITDACRDLWKWTIENPFGF 348


>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score =  214 bits (523), Expect = 8e-57
 Identities = 109/229 (47%), Positives = 142/229 (62%), Gaps = 5/229 (2%)

Query: 2   VFSSSCTVYGEPEH----LPITETHPTGSITNVYGRTKYFIEEMLKDLSAADDKWNIISL 57
           VFSSS TVYG+P      +PI E+ P    T+ YGRTK FIE +++D +  +   N   L
Sbjct: 126 VFSSSATVYGDPTRPGGTIPIPESCPREG-TSPYGRTKLFIENIIEDETKVNKSLNAALL 184

Query: 58  RYFNPVGAHPSGLIGEDPTKEFTNLMPFLAQVALGKKPVLTVFGTDYNTPDGTGIRDYIH 117
           RYFNP GAHPSG +GEDP     NL+P++AQVA+G+   L VFG DY T DGT IRDYIH
Sbjct: 185 RYFNPGGAHPSGELGEDPLGIPNNLLPYIAQVAVGRLDHLNVFGDDYPTSDGTPIRDYIH 244

Query: 118 VMDLASGHVAALNLLSQTHIRLKVYNLGTGKGVSVKELVNVFERVTKAKVPLKYVDRRLG 177
           V DLA  HVAAL+ L Q  +  + +NLG+G G +V +++N F +     +P K   RR G
Sbjct: 245 VCDLAEAHVAALDYLRQHFVSCRPWNLGSGTGSTVFQVLNAFSKAVGRDLPYKVTPRRAG 304

Query: 178 DISAMWADTSLAKEELGWSTQLTIEEMCTDFWRWQTMNPDGYPKKTKKT 226
           D+  + A+ + A EEL W T  +I E+C D WRWQ   P G+     KT
Sbjct: 305 DVVNLTANPTRANEELKWKTSRSIYEICVDTWRWQQKYPYGFDLTHTKT 353


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 170 KYVDRRLGDISAMWADTSLAKEELGWSTQLTIEEMCTDFWRW-QTMNP--DGYPKKTKKT 226
           +Y  + +     +  D S  KEE+G+     + E    F RW ++  P  DG P+K K+T
Sbjct: 23  EYTSKEVKHPEDVKVDASYEKEEVGYGELEVVPERGNLFQRWYRSFLPPEDGKPQKLKRT 82


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 44  DLSAADDKWNIISLRYFNPVGAHPSGLIGED 74
           D   A+D++   + R+F P+   PS +  ED
Sbjct: 81  DPKLAEDRYRSSAARHFEPISIPPSAITSED 111


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 130 NLLSQTHIRLKVYNLGTGKGVSVKELVNVFERVTKAKVPLKYVDRR 175
           +LL Q+++RLK+ N  TG  +S KE  + F   T     +++ D R
Sbjct: 467 SLLHQSNVRLKIINHFTG-SISCKE-SSEFSNQTTENSEMEFFDDR 510


>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 434

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)

Query: 18  ITETHPTGSITNVYGRTKYFIEEMLKD---LSAADDKWN 53
           I E H  G I  V G T Y+++ +L +   LSA D   N
Sbjct: 85  IDEIHSQGKIPIVVGGTHYYLQSLLFEDTTLSAIDKLTN 123


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.134    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,154,177
Number of Sequences: 5004
Number of extensions: 48425
Number of successful extensions: 113
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 106
Number of HSP's gapped (non-prelim): 7
length of query: 234
length of database: 2,362,478
effective HSP length: 71
effective length of query: 163
effective length of database: 2,007,194
effective search space: 327172622
effective search space used: 327172622
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)