GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001865-TA|BGIBMGA001865-PA|IPR008089|Nucleotide sugar
epimerase, IPR005886|UDP-glucose 4-epimerase, IPR001509|NAD-dependent
epimerase/dehydratase
         (234 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30795| Best HMM Match : Epimerase (HMM E-Value=0)                  268   4e-72
SB_15042| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.001
SB_34401| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 28   7.6  
SB_13206| Best HMM Match : Extensin_2 (HMM E-Value=0.031)              28   7.6  

>SB_30795| Best HMM Match : Epimerase (HMM E-Value=0)
          Length = 869

 Score =  268 bits (656), Expect = 4e-72
 Identities = 124/205 (60%), Positives = 154/205 (75%), Gaps = 1/205 (0%)

Query: 1   MVFSSSCTVYGEPEHLPITETHPTGSITNVYGRTKYFIEEMLKDLSAADDKWNIISLRYF 60
           +VFSSS TVYG+P+ LPITE+HP G  TN YG+TKYFIEEMLKDL  A+ ++NI+SLRYF
Sbjct: 157 LVFSSSATVYGDPQFLPITESHPAGGCTNPYGKTKYFIEEMLKDLCYAEKEFNIVSLRYF 216

Query: 61  NPVGAHPSGLIGEDPTKEFTNLMPFLAQVALGKKPVLTVFGTDYNTPDGTGIRDYIHVMD 120
           NPVGAH SG IGEDP     NL+P++ QVA+GK+P L VFG DY+TPDGTG+RDYIHV+D
Sbjct: 217 NPVGAHKSGKIGEDPKDIPNNLLPYITQVAVGKRPHLNVFGKDYDTPDGTGVRDYIHVVD 276

Query: 121 LASGHVAALNLLSQTHIRLKVYNLGTGKGVSVKELVNVFERVTKAKVPLKYVDRRLGDIS 180
           LA GHVAAL  + +     KVYNLGTG+G SV E+V   E+ +  ++P K+ DRR GDI+
Sbjct: 277 LAMGHVAALKKVEE-KCGWKVYNLGTGRGYSVLEMVKAVEKASGKEIPYKFTDRRAGDIA 335

Query: 181 AMWADTSLAKEELGWSTQLTIEEMC 205
           + +AD SLA +EL W       EMC
Sbjct: 336 SCYADPSLAAKELNWKATRAQNEMC 360


>SB_15042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 45

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 124 GHVAALNLLSQTHIRLKVYNLGTGKGVSVKELVNVFERVTKAKV 167
           GHVAAL  + +     KVYNLGTG+G SV E+V   E+ +  +V
Sbjct: 2   GHVAALKKVEEK-CGWKVYNLGTGRGYSVLEMVKAVEKASGKEV 44


>SB_34401| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 2629

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 10/81 (12%)

Query: 126 VAALNLLSQTHIRLKVYNLGTGKGVSVKELVNVFERVTKAKVPLKYVDRRLGDISAMWAD 185
           +AA N+L   H   K+ +LG  + VS     +++ R + A++P+K++       S ++  
Sbjct: 286 LAARNVLVGEHNTCKISDLGLARDVS----QDIYTRTSSARLPVKWMPPE----SLLYGQ 337

Query: 186 TSLAKEELGWSTQLTIEEMCT 206
           +S A +   WS  + + E+ T
Sbjct: 338 SSSASDV--WSYGIVLWEIFT 356


>SB_13206| Best HMM Match : Extensin_2 (HMM E-Value=0.031)
          Length = 1099

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/60 (28%), Positives = 26/60 (43%)

Query: 62  PVGAHPSGLIGEDPTKEFTNLMPFLAQVALGKKPVLTVFGTDYNTPDGTGIRDYIHVMDL 121
           PV  H   ++   P   F    P ++Q  L      TV  + Y T  G+ +RDY H + +
Sbjct: 183 PVIVHRPAVVYHQPPIIFHQPPPAVSQPLLFSHDSFTVHPSFYATHHGSVVRDYGHYIGI 242


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.134    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,352,868
Number of Sequences: 59808
Number of extensions: 336562
Number of successful extensions: 611
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 607
Number of HSP's gapped (non-prelim): 4
length of query: 234
length of database: 16,821,457
effective HSP length: 80
effective length of query: 154
effective length of database: 12,036,817
effective search space: 1853669818
effective search space used: 1853669818
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)