GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001865-TA|BGIBMGA001865-PA|IPR008089|Nucleotide sugar
epimerase, IPR005886|UDP-glucose 4-epimerase, IPR001509|NAD-dependent
epimerase/dehydratase
         (234 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   5.6  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   7.4  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   7.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.8  

>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 12  EPEHLPITETHPTGSITNVYGRTKYFIEEMLKDL 45
           E +HL I      G +  VY R  + + E+ K L
Sbjct: 223 EEDHLRIISMQMGGDLGQVYRRLVHAVNEIEKRL 256


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 115 YIHVMDLASGHVAALNLLSQTHIRLKVYNLG 145
           Y HV + +S  +  L+ +  TH    VY LG
Sbjct: 272 YPHVPEYSSSIIMELHNIEGTHYVKIVYYLG 302


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 115 YIHVMDLASGHVAALNLLSQTHIRLKVYNLG 145
           Y HV + +S  +  L+ +  TH    VY LG
Sbjct: 287 YPHVPEYSSSIIMELHNIEGTHYVKIVYYLG 317


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 101 GTDYNTPDGTGIRDYIHVMDLASGHVAAL 129
           G+D N  D +  R  I ++DL+   +  L
Sbjct: 199 GSDGNDGDESSCRADIRILDLSRNEITRL 227


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.134    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,707
Number of Sequences: 429
Number of extensions: 2936
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 4
length of query: 234
length of database: 140,377
effective HSP length: 56
effective length of query: 178
effective length of database: 116,353
effective search space: 20710834
effective search space used: 20710834
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 42 (21.0 bits)