GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001864-TA|BGIBMGA001864-PA|IPR007866|Protein of unknown
function DUF714
         (119 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    27   1.0  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   2.4  
SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f...    25   3.2  
SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces...    25   4.2  
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc...    24   7.4  
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    24   7.4  
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    23   9.7  

>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 26.6 bits (56), Expect = 1.0
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 62  FAGGMVANGLLGEPILAPLKNTPQLVIGTVTWYLVFYTPFDVG 104
           F  G++  G +  P+L  L   PQ V+  + W + F   F  G
Sbjct: 379 FIQGLMTVGTMTGPLLLVLHQIPQCVLAGLFWVMGFSAIFGNG 421


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 11/67 (16%)

Query: 25   AHSLLCALAVREDLGSGAQA---------FSRKHPLSCWLSTMLVIFAGGMVANGLL--G 73
            AHS +CA  + E +G   +A          S K P SC+ +T  +     +   G L  G
Sbjct: 983  AHSNVCAARIYEHMGQAREAEFFYRQACSISEKMPFSCFSATFQLRLCSLLTRAGKLEKG 1042

Query: 74   EPILAPL 80
            E IL  L
Sbjct: 1043 EKILFDL 1049


>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
           factor complex subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 4/51 (7%)

Query: 21  YFDIAHSLLCALAVREDLGSGAQ----AFSRKHPLSCWLSTMLVIFAGGMV 67
           Y DI HS++    +   +  G++    +  RK+  + WLS + V  +GG +
Sbjct: 245 YQDILHSIITDFRINIIIVLGSERLYSSMKRKYADATWLSVVKVSSSGGCI 295


>SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 356

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 1   MDPESFLDLANQVIKLKMYPYFDIAHSLLCALAVRED 37
           MD E FL L   ++   ++   D++  LLC LA  ED
Sbjct: 83  MDDE-FLQLIFSIVTNPLHGLADLSCMLLCNLAKEED 118


>SPCC622.12c |||NADP-specific glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 451

 Score = 23.8 bits (49), Expect = 7.4
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 5/45 (11%)

Query: 32  LAVREDLGSGAQAF-----SRKHPLSCWLSTMLVIFAGGMVANGL 71
           +A   ++GS A+A      SR     CWL+      AGG+  +GL
Sbjct: 335 VAEGSNMGSSAEAVEVFEKSRASGEGCWLAPGKAANAGGVAVSGL 379


>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 23.8 bits (49), Expect = 7.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)

Query: 81  KNTPQLVIGTVTWYLVFYTP 100
           +NTPQL    + WY   Y P
Sbjct: 230 ENTPQLPAAKMMWYRRHYLP 249


>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 23.4 bits (48), Expect = 9.7
 Identities = 9/13 (69%), Positives = 12/13 (92%)

Query: 77  LAPLKNTPQLVIG 89
           LAPLK+TP +V+G
Sbjct: 427 LAPLKDTPVMVMG 439


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.326    0.141    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 548,191
Number of Sequences: 5004
Number of extensions: 20631
Number of successful extensions: 54
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 50
Number of HSP's gapped (non-prelim): 7
length of query: 119
length of database: 2,362,478
effective HSP length: 65
effective length of query: 54
effective length of database: 2,037,218
effective search space: 110009772
effective search space used: 110009772
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 48 (23.4 bits)