GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001864-TA|BGIBMGA001864-PA|IPR007866|Protein of unknown
function DUF714
         (119 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0136 - 11114409-11114576,11114656-11114784,11114873-111150...    30   0.57 
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622...    28   1.7  
05_07_0185 - 28257291-28257616,28258202-28258469,28258580-28260061     27   5.3  
02_01_0025 - 163859-164329                                             26   7.0  
08_02_0288 + 15352104-15352294,15352806-15352831,15352890-153530...    26   9.2  

>10_06_0136 -
           11114409-11114576,11114656-11114784,11114873-11115016,
           11115130-11115299,11116441-11116528,11116590-11116652,
           11116678-11116799,11118506-11118671
          Length = 349

 Score = 29.9 bits (64), Expect = 0.57
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 2/77 (2%)

Query: 26  HSLLCALAVREDLGSGAQAFSRKHPLSCWLSTMLVIFAGGMVANGLLGEPILAPLKNTPQ 85
           HS   A     DL S   A    HP    +  + V+F    +   +  +PI     N+ +
Sbjct: 39  HSTATACRAAPDLHSSTGAAILPHPSKVLIIALRVLFYAVYLWTLVYLDPITEA--NSFK 96

Query: 86  LVIGTVTWYLVFYTPFD 102
           L+I +  + L F TPFD
Sbjct: 97  LIIASTFYILFFGTPFD 113


>03_05_1065 +
           30061588-30061883,30061995-30062056,30062196-30062276,
           30062391-30062464,30062547-30062629,30063044-30063147,
           30063526-30063665,30063736-30063783,30063939-30063991,
           30064178-30064262,30064346-30064412,30064496-30064606,
           30065262-30065283,30066244-30071110,30071186-30071374,
           30071463-30071577,30072329-30073388,30074247-30074694,
           30074966-30075019,30075105-30076898,30076989-30077949,
           30078271-30078384,30078459-30078613,30078934-30079026,
           30079341-30079613,30093423-30093975,30094465-30094540,
           30094619-30094718
          Length = 4025

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 47  RKHPLSCWLSTMLVIFAGGMVANGLLGEPILAPLKN-TPQLV 87
           R  PL    ST+L I A G+     L E I  PL+  +PQL+
Sbjct: 591 RLRPLFACFSTVLQIMASGVAERNSLKELIAGPLEGLSPQLL 632


>05_07_0185 - 28257291-28257616,28258202-28258469,28258580-28260061
          Length = 691

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 19  YPYFDIAHSLLCALAVREDLGSGA-QAFSRKHPLSC 53
           YP   +  ++ C LA   DLG+ A +A  R+H  SC
Sbjct: 346 YPDLPLHDAIWCLLAADGDLGAAAREAERRQHRPSC 381


>02_01_0025 - 163859-164329
          Length = 156

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 28 LLCALAVREDLGSGAQAFSRKHPLSCWLSTMLVIFAGGMVANGLLGEPILAPLKNTPQ 85
          L C L  R+    G +            +T       G+ A+GLL +P  AP++ TPQ
Sbjct: 7  LTCNLVTRQRQRGGVEEDEYDGRRQPQTATCCTALKRGVTADGLLAQPRYAPVR-TPQ 63


>08_02_0288 +
           15352104-15352294,15352806-15352831,15352890-15353074,
           15353850-15353896,15354224-15354269
          Length = 164

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)

Query: 83  TPQLVIGTVTWYLVFYTPFDVG 104
           TPQ  IG  +  L+FYT F  G
Sbjct: 9   TPQCCIGAGSAILIFYTRFSTG 30


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.326    0.141    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,615,414
Number of Sequences: 37544
Number of extensions: 144879
Number of successful extensions: 308
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 307
Number of HSP's gapped (non-prelim): 5
length of query: 119
length of database: 14,793,348
effective HSP length: 73
effective length of query: 46
effective length of database: 12,052,636
effective search space: 554421256
effective search space used: 554421256
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 54 (25.8 bits)