GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001864-TA|BGIBMGA001864-PA|IPR007866|Protein of unknown
function DUF714
         (119 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23696| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.77 
SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.0  
SB_41423| Best HMM Match : 7tm_1 (HMM E-Value=0.27)                    27   3.1  
SB_52686| Best HMM Match : UPF0233 (HMM E-Value=1.1)                   27   4.1  
SB_14712| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.5  

>SB_23696| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 559

 Score = 29.5 bits (63), Expect = 0.77
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 44  AFSRKHPLSCWLSTM-LVIFAGGMVANGLLGEPILAPLK 81
           AF +++PL    S    VI + GMV N L+  P+L P+K
Sbjct: 118 AFHKRYPLFASASDDGTVIISHGMVYNDLMQNPLLVPVK 156


>SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4085

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)

Query: 31   ALAVRED-LGSGAQAFSRKHPLSCWL 55
            A  VRED +   AQAF+R+HP + WL
Sbjct: 3873 ARGVREDSVTPSAQAFARQHPRAYWL 3898


>SB_41423| Best HMM Match : 7tm_1 (HMM E-Value=0.27)
          Length = 223

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)

Query: 48 KHPLSCWLSTMLVIFAGGMVAN---GLLGEPILA 78
          K PL+C+ +T+     G +V+N   GL+ EP+ A
Sbjct: 48 KDPLNCFRTTLSTFMTGILVSNFLTGLIVEPVFA 81


>SB_52686| Best HMM Match : UPF0233 (HMM E-Value=1.1)
          Length = 189

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 3/35 (8%)

Query: 47 RKHPLSCWLSTMLVIFAGGMVAN---GLLGEPILA 78
          R  PL+C+ +T+     G +V+N   GL+ EP+ A
Sbjct: 56 RTDPLNCFRTTLSTFMTGILVSNFLTGLIVEPVFA 90


>SB_14712| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 239

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)

Query: 33  AVREDLGSGAQ---AFSRKHPLSCWLSTMLVI 61
           AVR+D+ SG     A  +KHPL   L+T  V+
Sbjct: 77  AVRKDIDSGMLGNLAVDKKHPLGAKLTTTTVV 108


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.326    0.141    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,811,267
Number of Sequences: 59808
Number of extensions: 138372
Number of successful extensions: 238
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 237
Number of HSP's gapped (non-prelim): 5
length of query: 119
length of database: 16,821,457
effective HSP length: 73
effective length of query: 46
effective length of database: 12,455,473
effective search space: 572951758
effective search space used: 572951758
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 54 (25.8 bits)