Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001864-TA|BGIBMGA001864-PA|IPR007866|Protein of unknown
function DUF714
(119 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL117195-24|CAB55033.2| 313|Caenorhabditis elegans Hypothetical... 141 1e-34
AL117195-9|CAB55030.1| 258|Caenorhabditis elegans Hypothetical ... 119 5e-28
Z83110-4|CAB05526.1| 88|Caenorhabditis elegans Hypothetical pr... 28 1.5
Z32683-9|CAA83622.1| 160|Caenorhabditis elegans Hypothetical pr... 28 1.5
U88174-3|ABP57824.1| 1058|Caenorhabditis elegans Tomosyn synapti... 26 8.1
U88174-2|AAP68903.1| 1211|Caenorhabditis elegans Tomosyn synapti... 26 8.1
U88174-1|ABP57823.1| 1124|Caenorhabditis elegans Tomosyn synapti... 26 8.1
AY997306-1|AAY44303.1| 1133|Caenorhabditis elegans TOM-1 isoform... 26 8.1
AY997305-1|AAY44302.1| 1128|Caenorhabditis elegans TOM-1 isoform... 26 8.1
AY912103-1|AAX89146.1| 1058|Caenorhabditis elegans tomosyn protein. 26 8.1
AY912102-1|AAX89145.1| 1124|Caenorhabditis elegans tomosyn isofo... 26 8.1
AC006695-11|AAK71874.1| 364|Caenorhabditis elegans Seven tm rec... 26 8.1
>AL117195-24|CAB55033.2| 313|Caenorhabditis elegans Hypothetical
protein Y57A10A.28 protein.
Length = 313
Score = 141 bits (341), Expect = 1e-34
Identities = 61/115 (53%), Positives = 85/115 (73%)
Query: 1 MDPESFLDLANQVIKLKMYPYFDIAHSLLCALAVREDLGSGAQAFSRKHPLSCWLSTMLV 60
+D ++ +D V KLK+YPYFD AH +L L+VR DLG A +FSRKHP SCWLS ML+
Sbjct: 10 IDHDTLIDAGGYVQKLKLYPYFDAAHYVLTCLSVRHDLGPDAISFSRKHPFSCWLSCMLM 69
Query: 61 IFAGGMVANGLLGEPILAPLKNTPQLVIGTVTWYLVFYTPFDVGYKVAKFLPVKV 115
FAG ++ LLGEPI++PLK +++G++ WYLVFY+PFDV +++A + PVK+
Sbjct: 70 SFAGSFLSCFLLGEPIISPLKQHADILLGSIVWYLVFYSPFDVVFRLATWFPVKL 124
>AL117195-9|CAB55030.1| 258|Caenorhabditis elegans Hypothetical
protein Y57A10A.10 protein.
Length = 258
Score = 119 bits (287), Expect = 5e-28
Identities = 52/87 (59%), Positives = 64/87 (73%)
Query: 32 LAVREDLGSGAQAFSRKHPLSCWLSTMLVIFAGGMVANGLLGEPILAPLKNTPQLVIGTV 91
+ VR+DLGS A FSRKHPLSCWLS+ML+ FA +AN LLGEP++AP K +++ T+
Sbjct: 3 IEVRDDLGSAASIFSRKHPLSCWLSSMLMCFADAFLANFLLGEPVIAPFKRHDDIILATI 62
Query: 92 TWYLVFYTPFDVGYKVAKFLPVKVVAA 118
WYLVFY PFD YK+AK PVK V A
Sbjct: 63 IWYLVFYAPFDGIYKIAKITPVKCVLA 89
>Z83110-4|CAB05526.1| 88|Caenorhabditis elegans Hypothetical
protein F57C2.4 protein.
Length = 88
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 58 MLVIFAGGMVANGLLGEPI 76
++V AGG+VA+G+ GEPI
Sbjct: 9 LVVALAGGIVAHGIKGEPI 27
>Z32683-9|CAA83622.1| 160|Caenorhabditis elegans Hypothetical
protein R07E5.13 protein.
Length = 160
Score = 28.3 bits (60), Expect = 1.5
Identities = 17/60 (28%), Positives = 26/60 (43%)
Query: 40 SGAQAFSRKHPLSCWLSTMLVIFAGGMVANGLLGEPILAPLKNTPQLVIGTVTWYLVFYT 99
S + ++H + W L G VAN L L LK P ++ G +T L+ Y+
Sbjct: 6 SKVTTYFKQHSTAEWKHYFLSTHFWGPVANWGLPLAALGDLKKNPDMISGPMTSALLIYS 65
>U88174-3|ABP57824.1| 1058|Caenorhabditis elegans Tomosyn synaptic
protein protein1, isoform d protein.
Length = 1058
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 59 LVIFAGGMVANGLLGEPILAPLKNTPQLVIGTVTWYLVFYTPFD 102
+++F+GGM + L P L LK + + W ++ + P +
Sbjct: 254 IIMFSGGMPTDDGLPMPALTILKGGKSATVLEMDWPIIQFIPLN 297
>U88174-2|AAP68903.1| 1211|Caenorhabditis elegans Tomosyn synaptic
protein protein1, isoform c protein.
Length = 1211
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 59 LVIFAGGMVANGLLGEPILAPLKNTPQLVIGTVTWYLVFYTPFD 102
+++F+GGM + L P L LK + + W ++ + P +
Sbjct: 254 IIMFSGGMPTDDGLPMPALTILKGGKSATVLEMDWPIIQFIPLN 297
>U88174-1|ABP57823.1| 1124|Caenorhabditis elegans Tomosyn synaptic
protein protein1, isoform a protein.
Length = 1124
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 59 LVIFAGGMVANGLLGEPILAPLKNTPQLVIGTVTWYLVFYTPFD 102
+++F+GGM + L P L LK + + W ++ + P +
Sbjct: 289 IIMFSGGMPTDDGLPMPALTILKGGKSATVLEMDWPIIQFIPLN 332
>AY997306-1|AAY44303.1| 1133|Caenorhabditis elegans TOM-1 isoform E
protein.
Length = 1133
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 59 LVIFAGGMVANGLLGEPILAPLKNTPQLVIGTVTWYLVFYTPFD 102
+++F+GGM + L P L LK + + W ++ + P +
Sbjct: 289 IIMFSGGMPTDDGLPMPALTILKGGKSATVLEMDWPIIQFIPLN 332
>AY997305-1|AAY44302.1| 1128|Caenorhabditis elegans TOM-1 isoform D
protein.
Length = 1128
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 59 LVIFAGGMVANGLLGEPILAPLKNTPQLVIGTVTWYLVFYTPFD 102
+++F+GGM + L P L LK + + W ++ + P +
Sbjct: 289 IIMFSGGMPTDDGLPMPALTILKGGKSATVLEMDWPIIQFIPLN 332
>AY912103-1|AAX89146.1| 1058|Caenorhabditis elegans tomosyn protein.
Length = 1058
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 59 LVIFAGGMVANGLLGEPILAPLKNTPQLVIGTVTWYLVFYTPFD 102
+++F+GGM + L P L LK + + W ++ + P +
Sbjct: 254 IIMFSGGMPTDDGLPMPALTILKGGKSATVLEMDWPIIQFIPLN 297
>AY912102-1|AAX89145.1| 1124|Caenorhabditis elegans tomosyn isoform
A protein.
Length = 1124
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 59 LVIFAGGMVANGLLGEPILAPLKNTPQLVIGTVTWYLVFYTPFD 102
+++F+GGM + L P L LK + + W ++ + P +
Sbjct: 289 IIMFSGGMPTDDGLPMPALTILKGGKSATVLEMDWPIIQFIPLN 332
>AC006695-11|AAK71874.1| 364|Caenorhabditis elegans Seven tm
receptor protein 206 protein.
Length = 364
Score = 25.8 bits (54), Expect = 8.1
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 66 MVANGLLGEPILAPLKNTPQLVIGTVTWYLVFYTPFDVGYKVAKFLPVKVV 116
+ NG+L IL LK+ QL GT + + F + F++ Y + ++ V V+
Sbjct: 22 LFCNGIL--MILIQLKSPKQL--GTYKYLMNFISIFEICYSIVDYIVVPVM 68
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.326 0.141 0.435
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,901,825
Number of Sequences: 27539
Number of extensions: 109043
Number of successful extensions: 237
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 226
Number of HSP's gapped (non-prelim): 12
length of query: 119
length of database: 12,573,161
effective HSP length: 73
effective length of query: 46
effective length of database: 10,562,814
effective search space: 485889444
effective search space used: 485889444
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 54 (25.8 bits)
- SilkBase 1999-2023 -