GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001864-TA|BGIBMGA001864-PA|IPR007866|Protein of unknown
function DUF714
         (119 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   1.6  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   1.6  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   1.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   2.2  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   2.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   2.9  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   2.9  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   2.9  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   5.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    20   6.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   6.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   6.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    20   8.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    20   8.8  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    20   8.8  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 52  SCWLSTMLVIFAGGMVANGLLGEPI 76
           S W  TM+      ++  GL G+P+
Sbjct: 139 SIWTMTMIAFDRYNVIVKGLSGKPL 163


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 52  SCWLSTMLVIFAGGMVANGLLGEPI 76
           S W  TM+      ++  GL G+P+
Sbjct: 105 SIWTMTMIAFDRYNVIVKGLSGKPL 129


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
          rhodopsin protein.
          Length = 154

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 52 SCWLSTMLVIFAGGMVANGLLGEPI 76
          S W  TM+      ++  GL G+P+
Sbjct: 15 SIWTMTMIAFDRYNVIVKGLSGKPL 39


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 5/31 (16%)

Query: 54  WLSTMLVIFAGGMVANGLLGEPILAPLKNTP 84
           WL T+L+++A     +  +G PI+  L NTP
Sbjct: 304 WL-TILLVWA----ISAAIGSPIVLGLNNTP 329


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 9/14 (64%), Positives = 10/14 (71%)

Query: 95  LVFYTPFDVGYKVA 108
           LVFY P D G KV+
Sbjct: 260 LVFYLPSDSGEKVS 273


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 9/14 (64%), Positives = 10/14 (71%)

Query: 95  LVFYTPFDVGYKVA 108
           LVFY P D G KV+
Sbjct: 256 LVFYLPSDSGEKVS 269


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 84  PQLVIGTVTWYLVFYTPFDVGYKV 107
           P ++I +V   LVFY P + G KV
Sbjct: 223 PCILINSVA-LLVFYVPSESGEKV 245


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 9/14 (64%), Positives = 10/14 (71%)

Query: 95  LVFYTPFDVGYKVA 108
           LVFY P D G KV+
Sbjct: 269 LVFYLPSDSGEKVS 282


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 8/14 (57%), Positives = 9/14 (64%)

Query: 95  LVFYTPFDVGYKVA 108
           L FY P D G K+A
Sbjct: 255 LAFYLPADSGEKIA 268


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)

Query: 95  LVFYTPFDVGYKV 107
           LVFY P + G KV
Sbjct: 253 LVFYLPAEAGEKV 265


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 59   LVIFAGGMVANGLLGEPILA-PLKNTPQL 86
            LV+ A   V +G L EP+L   +++ P +
Sbjct: 1085 LVVQAYNQVGSGPLSEPLLTQTMEDVPSI 1113


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 59   LVIFAGGMVANGLLGEPILA-PLKNTPQL 86
            LV+ A   V +G L EP+L   +++ P +
Sbjct: 1081 LVVQAYNQVGSGPLSEPLLTQTMEDVPSI 1109


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 95  LVFYTPFDVGYKVAKFLPVKV 115
           L FY P D G KV   + + +
Sbjct: 264 LTFYLPSDSGEKVTLSISILI 284


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 95  LVFYTPFDVGYKVAKFLPVKV 115
           L FY P D G KV   + + +
Sbjct: 264 LTFYLPSDSGEKVTLSISILI 284


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 55  LSTMLVIFAGGMVANG 70
           +STML    GG+V  G
Sbjct: 259 ISTMLASMGGGLVGLG 274


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.141    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,286
Number of Sequences: 429
Number of extensions: 1222
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of query: 119
length of database: 140,377
effective HSP length: 51
effective length of query: 68
effective length of database: 118,498
effective search space:  8057864
effective search space used:  8057864
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.2 bits)
S2: 39 (19.8 bits)