GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001864-TA|BGIBMGA001864-PA|IPR007866|Protein of unknown
function DUF714
         (119 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54980.1 68416.m06100 pentatricopeptide (PPR) repeat-containi...    31   0.16 
At2g18915.2 68415.m02208 F-box family protein / LOV kelch protei...    27   3.4  
At2g18915.1 68415.m02207 F-box family protein / LOV kelch protei...    27   3.4  
At1g13570.1 68414.m01591 F-box family protein contains F-box dom...    27   3.4  
At3g11060.1 68416.m01335 hypothetical protein                          27   4.5  
At5g54830.1 68418.m06829 DOMON domain-containing protein / dopam...    26   7.8  

>At3g54980.1 68416.m06100 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 851

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 13/41 (31%), Positives = 23/41 (56%)

Query: 7   LDLANQVIKLKMYPYFDIAHSLLCALAVREDLGSGAQAFSR 47
           +D+ NQ+++L + P+F   +  L AL  R  L    + +SR
Sbjct: 183 VDIVNQMLELDVIPFFPYVNRTLSALVQRNSLTEAKELYSR 223


>At2g18915.2 68415.m02208 F-box family protein / LOV kelch protein 2
           (LKP2) / adagio 2 (ADO2) E3 ubiquitin ligase SCF complex
           F-box subunit; identical to Adagio 2 GI:13487070 from
           [Arabidopsis thaliana]; contains Pfam profiles PF01344:
           Kelch motif and PF00646: F-box domain; identical to cDNA
           LOV kelch protein 2 GI:18146957; identical to cDNA
           Adagio 2 (ADO2) GI:13487069
          Length = 611

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 49  HPLSCWLSTMLVIFAGGMVANGLLGEPILAPLKNTP 84
           H LSC   + LV+F GG  ++GLL +  L  L   P
Sbjct: 349 HTLSCVNGSRLVVF-GGYGSHGLLNDVFLLDLDADP 383


>At2g18915.1 68415.m02207 F-box family protein / LOV kelch protein 2
           (LKP2) / adagio 2 (ADO2) E3 ubiquitin ligase SCF complex
           F-box subunit; identical to Adagio 2 GI:13487070 from
           [Arabidopsis thaliana]; contains Pfam profiles PF01344:
           Kelch motif and PF00646: F-box domain; identical to cDNA
           LOV kelch protein 2 GI:18146957; identical to cDNA
           Adagio 2 (ADO2) GI:13487069
          Length = 601

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 49  HPLSCWLSTMLVIFAGGMVANGLLGEPILAPLKNTP 84
           H LSC   + LV+F GG  ++GLL +  L  L   P
Sbjct: 339 HTLSCVNGSRLVVF-GGYGSHGLLNDVFLLDLDADP 373


>At1g13570.1 68414.m01591 F-box family protein contains F-box domain
           Pfam:PF00646 ; similar to SKP1 interacting partner 2
           (SKIP2) TIGR_Ath1:At5g67250
          Length = 416

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 4/89 (4%)

Query: 26  HSLLCALAVREDLGSGAQAFSRKHPLSCWLSTMLVIFAGGMVANGLLGEPILAPLKNTPQ 85
           H +L A  V E L SG         LS + S +L I A  ++   L GE     L+NTP+
Sbjct: 163 HQILVAPEVIESLISGCPLLEFLS-LSYFDSLVLSISAPNLMYLYLDGEFKDIFLENTPK 221

Query: 86  LVIGTVTWYL-VFYTPFDVG--YKVAKFL 111
           LV  +V+ Y+    T F+    Y + KFL
Sbjct: 222 LVAISVSMYMHEDVTDFEQSSDYNLVKFL 250


>At3g11060.1 68416.m01335 hypothetical protein
          Length = 213

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)

Query: 79  PLKNTPQLVIGTVTWYLVFYTP 100
           P K  PQ+V   +  YLVF TP
Sbjct: 81  PKKRIPQVVFSELALYLVFITP 102


>At5g54830.1 68418.m06829 DOMON domain-containing protein / dopamine
           beta-monooxygenase N-terminal domain-containing protein
           contains Pfam PF03351: DOMON domain
          Length = 907

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 3/27 (11%)

Query: 61  IFAGGMVANGLLGEP---ILAPLKNTP 84
           I+AGG   +G+L  P   + AP +NTP
Sbjct: 461 IYAGGQETHGVLSSPSELVWAPNRNTP 487


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.326    0.141    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,830,597
Number of Sequences: 28952
Number of extensions: 108247
Number of successful extensions: 239
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 237
Number of HSP's gapped (non-prelim): 6
length of query: 119
length of database: 12,070,560
effective HSP length: 72
effective length of query: 47
effective length of database: 9,986,016
effective search space: 469342752
effective search space used: 469342752
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 54 (25.8 bits)