Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001861-TA|BGIBMGA001861-PA|undefined
         (99 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34262| Best HMM Match : efhand (HMM E-Value=6.3e-26)                29   0.83 
SB_8887| Best HMM Match : G-patch (HMM E-Value=1.2e-08)                28   1.1  
SB_8912| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   1.9  
SB_2690| Best HMM Match : Pre-SET (HMM E-Value=0.11)                   27   1.9  
SB_34249| Best HMM Match : fn3 (HMM E-Value=0)                         27   3.3  
SB_8330| Best HMM Match : Spb1_C (HMM E-Value=5.3)                     27   3.3  
SB_47573| Best HMM Match : RNA_pol_Rpa2_4 (HMM E-Value=4.8)            26   4.4  
SB_12396| Best HMM Match : Myc-LZ (HMM E-Value=6.2e-10)                26   4.4  
SB_34679| Best HMM Match : DUF141 (HMM E-Value=3.6)                    26   4.4  
SB_8195| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   4.4  
SB_11031| Best HMM Match : VPS9 (HMM E-Value=8.3e-21)                  26   5.8  
SB_13749| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.8  
SB_14751| Best HMM Match : DUF1602 (HMM E-Value=1.9)                   25   7.7  

>SB_34262| Best HMM Match : efhand (HMM E-Value=6.3e-26)
          Length = 354

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 18  RRKQNDLITSDE---KTDLKIPQGVFEHIKNKRDTSRRNWSRN 57
           R K+  +  S E   KT +++P+ V E I+N R T   +W R+
Sbjct: 147 REKKKQIHNSGENLAKTQIEVPKEVKESIRNARKTLVGSWQRD 189


>SB_8887| Best HMM Match : G-patch (HMM E-Value=1.2e-08)
          Length = 739

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 63  YNPPPYLVFNSKTGSYYPY 81
           YNP   L +N+ TG+YY Y
Sbjct: 254 YNPRTCLYYNNNTGTYYTY 272


>SB_8912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/55 (25%), Positives = 26/55 (47%)

Query: 11 VTLTSAARRKQNDLITSDEKTDLKIPQGVFEHIKNKRDTSRRNWSRNTASNAYNP 65
          V LT    +K N++    E +++ +  G   H+K + D +RR  +  +     NP
Sbjct: 16 VALTEKGCKKINEISDCLESSNIHVTSGQRVHVKCRLDYTRRPAANKSVDENKNP 70


>SB_2690| Best HMM Match : Pre-SET (HMM E-Value=0.11)
          Length = 715

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/55 (25%), Positives = 26/55 (47%)

Query: 11 VTLTSAARRKQNDLITSDEKTDLKIPQGVFEHIKNKRDTSRRNWSRNTASNAYNP 65
          V LT    +K N++    E +++ +  G   H+K + D +RR  +  +     NP
Sbjct: 16 VALTEKGCKKINEISDCLESSNIHVTSGQRVHVKCRLDYTRRPAANKSVDENKNP 70


>SB_34249| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 2195

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 44   KNKRDTSRRNWSRNTASNAYNPPPYLVFNSKTGSYYPYYKFPIENNYIRRNM 95
            K  R+ + +N S  T +  ++PP     N     Y  +++   E+N +  NM
Sbjct: 1376 KPPRNVTAKNSSSTTLTLTWSPPDEFYLNGILQGYRVFWQKTFESNPVVHNM 1427


>SB_8330| Best HMM Match : Spb1_C (HMM E-Value=5.3)
          Length = 230

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 7/58 (12%)

Query: 20  KQNDLITSDEKTDLKIPQGVFEHI-----KNKRDTSRRNWSRNTASNA--YNPPPYLV 70
           K ND I+ D+    K+P  + E +     K KR+  RR   +   S A   +PPP ++
Sbjct: 139 KDNDNISLDDLKPFKVPSSMREKMKAYMRKMKREALRRRAEQKVVSFAERIDPPPSVI 196


>SB_47573| Best HMM Match : RNA_pol_Rpa2_4 (HMM E-Value=4.8)
          Length = 207

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 28  DEKTDLKIPQGVFEHIKNKRDTSRRNWSRNTASNAYNPPPYLVFNSKTGSYYPYYKFPIE 87
           +E  + KI Q   ++I    +   RN      S  + PP +LV  S      PY+ +P  
Sbjct: 97  EELGNKKIEQS--QNISGIENQMGRNSENKFMSGLFLPPAFLVPFSGFMGMVPYFPYPAP 154

Query: 88  NNYIRRNM 95
            N +RR M
Sbjct: 155 -NMLRRVM 161


>SB_12396| Best HMM Match : Myc-LZ (HMM E-Value=6.2e-10)
          Length = 293

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 37  QGVFEHIKNKRDTSRRNWS--RNTASNAYNPPPYLVFNS 73
           QG   H +N    +R NWS  RN +S+  N   +   NS
Sbjct: 77  QGTTHHTQNNSSHTRNNWSHTRNNSSHIRNNSSHTRKNS 115


>SB_34679| Best HMM Match : DUF141 (HMM E-Value=3.6)
          Length = 472

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 28  DEKTDLKIPQGVFEHIKNKRDTSRRNWSRNTASNAYNPPPYLVFNSKTGSYYPYYKFPIE 87
           +E  + KI Q   ++I    +   RN      S  + PP +LV  S      PY+ +P  
Sbjct: 94  EELGNKKIEQS--QNISGIENQMGRNSENKFMSGLFLPPAFLVPFSGFMGMVPYFPYPAP 151

Query: 88  NNYIRRNM 95
            N +RR M
Sbjct: 152 -NMLRRVM 158


>SB_8195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 84

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 41 EHIKNKRDTSRRNWSRNTASNAYNPPPYLVFNSKTGSYYP--YYKFPIEN 88
          E++K + D  RR+  + T     +PPP L         YP  + +FP  N
Sbjct: 22 ENVKFEHDGPRRSDGQTTTIITPHPPPRLQIGDNIFRSYPTDFRRFPKSN 71


>SB_11031| Best HMM Match : VPS9 (HMM E-Value=8.3e-21)
          Length = 900

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/46 (23%), Positives = 23/46 (50%)

Query: 18  RRKQNDLITSDEKTDLKIPQGVFEHIKNKRDTSRRNWSRNTASNAY 63
           RR+ +  +   E  D+K  +G+   ++ KRD S    ++ + +  Y
Sbjct: 287 RRRSSPDVEVQENKDIKKKKGILRGLRAKRDRSGSGRTKESNNKVY 332


>SB_13749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 300

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 30 KTDLKIPQGVFEHIKNKRDTSRRNWSRNTASNAYNPPP 67
          +TD  IP+  + H KN   + +R  S+ +  N  +P P
Sbjct: 61 RTDGSIPKNQYVHNKNTHLSVKRQNSQESVVNVPSPDP 98


>SB_14751| Best HMM Match : DUF1602 (HMM E-Value=1.9)
          Length = 334

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 49  TSRRNWSRNTA-SNAYNPPPYLVFNSKTGSYYPYYKFP 85
           TSR   S   A SN Y PPP  +  S + SY P  + P
Sbjct: 262 TSRSLESLQAAPSNPYKPPPIPLRASPSYSYKPLPRIP 299


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,676,396
Number of Sequences: 59808
Number of extensions: 149898
Number of successful extensions: 352
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 344
Number of HSP's gapped (non-prelim): 14
length of query: 99
length of database: 16,821,457
effective HSP length: 71
effective length of query: 28
effective length of database: 12,575,089
effective search space: 352102492
effective search space used: 352102492
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)