Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001861-TA|BGIBMGA001861-PA|undefined
(99 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_04_0015 - 15103044-15103191,15103253-15103313,15104580-151046... 29 0.61
01_01_0510 - 3723983-3724416,3724895-3725766,3725797-3726791,372... 29 0.61
05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,364... 29 0.80
06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,336... 27 1.8
01_06_0430 + 29299970-29300031,29300162-29300294,29301057-293011... 27 1.8
05_01_0115 + 804674-804766,805729-806442 27 3.2
05_01_0503 - 4196989-4197425,4197507-4199436,4200910-4201017 26 5.6
12_02_0947 + 24680119-24681497,24682213-24682275,24683380-246842... 25 7.5
01_01_0944 + 7437536-7437652,7438468-7438704 25 7.5
11_02_0125 + 8572035-8572112,8573603-8574016,8574171-8574428,857... 25 9.9
06_03_1183 + 28237467-28237612,28238035-28238089,28238216-282383... 25 9.9
06_03_0690 + 23545198-23545305,23545437-23547246,23547265-235473... 25 9.9
05_04_0202 - 19010953-19013355 25 9.9
04_03_0592 - 17678172-17679415,17679751-17679897,17680656-17681268 25 9.9
01_06_0214 + 27595125-27595200,27595298-27595494,27596077-275960... 25 9.9
>01_04_0015 -
15103044-15103191,15103253-15103313,15104580-15104643,
15104820-15104962,15105031-15105127
Length = 170
Score = 29.1 bits (62), Expect = 0.61
Identities = 17/63 (26%), Positives = 26/63 (41%)
Query: 5 GILLNLVTLTSAARRKQNDLITSDEKTDLKIPQGVFEHIKNKRDTSRRNWSRNTASNAYN 64
GIL + L+ +A R + TSDE + QG+ + + + SN Y
Sbjct: 102 GILSRTIPLSESAARGTLQMETSDEALLKALEQGILIACNSSAKVPDEQQTHSLVSNEYE 161
Query: 65 PPP 67
PP
Sbjct: 162 LPP 164
>01_01_0510 -
3723983-3724416,3724895-3725766,3725797-3726791,
3727332-3727439
Length = 802
Score = 29.1 bits (62), Expect = 0.61
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 42 HIKNKR-DTSR-RNWSRNTASNAYNPPPYLVFNSKTGSYYPYYK-FPIENNYI 91
H+K + D S+ RNW+R S Y PY F+ + G Y+ + +N+I
Sbjct: 146 HVKLQYFDVSKDRNWARGVRSTKYPGVPYTFFSQRQGCKVTLYQDAHVPDNFI 198
>05_01_0460 -
3644229-3644420,3644623-3644865,3644959-3645237,
3645328-3645525,3645614-3646249,3646352-3646606,
3646718-3646824,3646909-3650705,3650816-3651305,
3652043-3652433,3652621-3652713,3652818-3652941,
3653871-3654118
Length = 2350
Score = 28.7 bits (61), Expect = 0.80
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 7 LLNLVTLTSAARRKQNDLITSDEKTDLKIPQGV 39
L+N +T TS R++ I DE D +P GV
Sbjct: 366 LINPITSTSKVDRRERRTIEEDEDEDFCLPDGV 398
>06_01_0474 -
3362734-3362827,3363179-3363366,3363458-3363700,
3363820-3364098,3364189-3364386,3364475-3365110,
3365209-3365463,3365579-3365685,3365770-3369566,
3369677-3370166,3370918-3371308,3371481-3371573,
3371687-3371810,3372544-3372791
Length = 2380
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 7 LLNLVTLTSAARRKQNDLITSDEKTDLKIPQGV 39
L+N +T T+ R++ DE D ++P GV
Sbjct: 366 LINPITSTNKVDRRERRTTEEDEDEDFRLPDGV 398
>01_06_0430 +
29299970-29300031,29300162-29300294,29301057-29301160,
29302201-29302372,29302488-29302628,29302707-29303055,
29303133-29305477
Length = 1101
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 34 KIPQGVFEHIKNKRDTSRRNWSRNTASNAYNPPPY 68
K+ V E+I++ SR+N+ ++ SNA+N Y
Sbjct: 695 KVVHDVNENIEDHVSMSRKNYLNSSGSNAFNKERY 729
>05_01_0115 + 804674-804766,805729-806442
Length = 268
Score = 26.6 bits (56), Expect = 3.2
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 42 HIKNKRDTSRRNWSRNTASNAYNPPPYLVFNSKTGS 77
H+ +RD +R R A+ A PPP LV +S T S
Sbjct: 70 HVAKERDDARDQLQRLLAAAAAKPPP-LVTSSVTDS 104
>05_01_0503 - 4196989-4197425,4197507-4199436,4200910-4201017
Length = 824
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 42 HIKNKR-DTSR-RNWSRNTASNAYNPPPYLVFNSKTGSYYPYYK 83
H+K + D S+ R+W R S Y PY F+ + G Y+
Sbjct: 150 HVKLQYFDISKDRSWGRGVRSGKYPGVPYTFFSQRQGCKVTLYQ 193
>12_02_0947 +
24680119-24681497,24682213-24682275,24683380-24684239,
24684399-24684772,24685932-24686112,24686201-24686220
Length = 958
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 69 LVFNSKTGSYYPYYKFPIENNYIRRNMYKYS 99
++ + KT Y+ Y P E + RR + KYS
Sbjct: 240 ILIDVKTQRYFNYIPLPAEAKHGRRRVDKYS 270
>01_01_0944 + 7437536-7437652,7438468-7438704
Length = 117
Score = 25.4 bits (53), Expect = 7.5
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 56 RNTASNAYNPPPYLVFNSKTGSYY 79
RN + Y+ PYLV + K YY
Sbjct: 65 RNRRPDCYSQSPYLVLDPKEHQYY 88
>11_02_0125 +
8572035-8572112,8573603-8574016,8574171-8574428,
8574781-8574966
Length = 311
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 35 IPQGVFEHIKNKRDTSRRNWSRNTASNAYNPPPYLVFNSKTGSYY 79
+P F HI + +++ ++ AS PP Y V G++Y
Sbjct: 97 LPSNDFNHIFQSLEQCKQSIAQECASRGLQPPQYYV-AGVPGTFY 140
>06_03_1183 +
28237467-28237612,28238035-28238089,28238216-28238354,
28238433-28238487,28238578-28238646,28239338-28239560,
28239645-28239740,28240708-28240827,28240937-28241062,
28241369-28241524,28242706-28242828,28242913-28242980,
28243119-28243254,28243365-28243530,28243615-28243853
Length = 638
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 11 VTLTSAARRKQNDLITSDEKTDLKIPQGVFEHIKN 45
V LT ARR L EK + +P+ EH+ +
Sbjct: 87 VMLTEEARRAATTLRVDFEKGGIHLPKDKLEHVNH 121
>06_03_0690 +
23545198-23545305,23545437-23547246,23547265-23547348,
23547732-23548048,23549498-23549605,23550038-23550046
Length = 811
Score = 25.0 bits (52), Expect = 9.9
Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 13 LTSAARRKQNDLITSDEKTDLKIPQGVFEHIKNK-RDTS--RRNWSRNTASNAYNPPPYL 69
L+ A ++ D++ + + +I G H++ + RD + R W R + Y PY
Sbjct: 121 LSGEAIERRLDILDAGRR---RISHGPTIHVRLQFRDVAGDRHGWGRGVSGARYPGVPYT 177
Query: 70 VFNSKTGSYYPYYK 83
F+ + G Y+
Sbjct: 178 FFSQRPGCRVTLYQ 191
>05_04_0202 - 19010953-19013355
Length = 800
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 56 RNTASNAYNPPPYLVFNSKTGSYYPYYKFPIENNYIRRNM 95
R+ NA P F+ G Y+PY+ F N Y + +
Sbjct: 324 RSLGVNAILLEPVFPFHQVKGPYFPYHFFSPMNLYSSKGL 363
>04_03_0592 - 17678172-17679415,17679751-17679897,17680656-17681268
Length = 667
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 4 FGILLNLVTLTSAARRKQNDLITSDEKTDLKIPQGV 39
FGILL ++T+ R+++ND+ K + QG+
Sbjct: 263 FGILLLVLTVAFLVRKRKNDIQKQLRKKYFRKNQGL 298
>01_06_0214 +
27595125-27595200,27595298-27595494,27596077-27596095,
27596257-27596309,27596642-27596719,27596836-27597116,
27598089-27598194,27599029-27599076,27599208-27599255,
27600013-27600027
Length = 306
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/67 (19%), Positives = 26/67 (38%)
Query: 26 TSDEKTDLKIPQGVFEHIKNKRDTSRRNWSRNTASNAYNPPPYLVFNSKTGSYYPYYKFP 85
T D + K P + + +DT + W + Y+++N+K + P+
Sbjct: 204 TLDSEERSKAPVPIPDDTSIHKDTPAQPWESRNIGLYKHKSCYMLYNAKANAEAPFISNQ 263
Query: 86 IENNYIR 92
+ N R
Sbjct: 264 LSKNVSR 270
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,986,485
Number of Sequences: 37544
Number of extensions: 109609
Number of successful extensions: 235
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 223
Number of HSP's gapped (non-prelim): 15
length of query: 99
length of database: 14,793,348
effective HSP length: 71
effective length of query: 28
effective length of database: 12,127,724
effective search space: 339576272
effective search space used: 339576272
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)
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