BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001860-TA|BGIBMGA001860-PA|undefined (178 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c... 29 0.40 SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 28 0.92 SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb... 27 1.6 SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|... 26 2.8 SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon... 26 3.7 SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro... 25 4.9 SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe... 25 6.5 SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2... 25 6.5 SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida... 25 8.5 >SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 219 Score = 29.1 bits (62), Expect = 0.40 Identities = 14/48 (29%), Positives = 25/48 (52%) Query: 13 LALLAMANAQDPVKVVENADSVRDAKKRYGVNVVDNNNPGHADPFFAQ 60 LAL+A+A V + +DAK+R+ + D+N+ G F ++ Sbjct: 164 LALVAVAIGLTSVNTAAYSRCDKDAKRRWATELADSNSSGFVSRFLSR 211 >SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosaccharomyces pombe|chr 2|||Manual Length = 660 Score = 27.9 bits (59), Expect = 0.92 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 10/90 (11%) Query: 82 DYNPNGNG-YEPIEILYIKSAGIIFSEKEIDISTCPDLRMELPSTAKPLDH---DVPDLK 137 D+N GNG Y KS + SE + +ST + ++ K L ++ L+ Sbjct: 406 DFNLKGNGRYNE------KSQIAVPSEIRVQLSTLDAILLQFEHLRKELTQARKEIQILR 459 Query: 138 HPTDHGHKPQEQTHKSQEAPKIPDSKDNKD 167 H + +G + ++ K+ K D +NK+ Sbjct: 460 HTSQNGDQESNESSKNAITTKTTDKGNNKE 489 >SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 730 Score = 27.1 bits (57), Expect = 1.6 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%) Query: 60 QPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIEILYIKSA 101 Q +GN E ++N Y VNPP NP + + E Y SA Sbjct: 409 QQLLGNSNEVVEN--YDVNPPLPLNPLPSNTQQSESTYEYSA 448 >SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|chr 2|||Manual Length = 403 Score = 26.2 bits (55), Expect = 2.8 Identities = 12/50 (24%), Positives = 18/50 (36%) Query: 22 QDPVKVVENADSVRDAKKRYGVNVVDNNNPGHADPFFAQPTVGNGYEPID 71 Q P N + +G N + P F+ TV N +P+D Sbjct: 72 QQPTTSFSNTTTNAPQSTVFGQNAASRTGNSNTQPLFSWSTVNNPTKPVD 121 >SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component of oxoglutarate dehydrogenase complex |Schizosaccharomyces pombe|chr 2|||Manual Length = 452 Score = 25.8 bits (54), Expect = 3.7 Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 2/59 (3%) Query: 106 SEKEIDISTCPDLRMELPSTAKPLDHDVPDLKHPTDHGHKPQEQTHK--SQEAPKIPDS 162 S K I+ PDL E +A PD K P KP+ + Q PK ++ Sbjct: 152 SSKPIEEKPMPDLGAEQKESAPSSTKPAPDAKEPEFSSPKPKPAKSEPVKQSKPKATET 210 >SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy- 6- hydroxymethyldihydropteridinediphosphokinase/dihydroneop terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual Length = 686 Score = 25.4 bits (53), Expect = 4.9 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Query: 109 EIDISTCPDLRM-ELPSTAKPLDHDVPDLKHPTDHGHKPQEQTHKSQEAPKIPDSKDNKD 167 E ++ T P L + E +PL PDL HP H + + ++ S DNK Sbjct: 354 ESEVLTIPHLGLQEREFVLRPLLALSPDLVHPYTHQPLQEALDKLPSQGIRLYSSFDNKK 413 Query: 168 LPN 170 + N Sbjct: 414 IIN 416 >SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe|chr 2|||Manual Length = 738 Score = 25.0 bits (52), Expect = 6.5 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%) Query: 48 NNNPGHADPFFAQPTVGNGYEPIDNRPYIVNPPKDYNPNGNGY 90 NN+P + + Q G G + D PY ++P Y P G Y Sbjct: 172 NNSPYRPEDAYFQ-LQGAGVKA-DINPYNLSPYSQYGPEGTAY 212 >SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2|||Manual Length = 479 Score = 25.0 bits (52), Expect = 6.5 Identities = 9/30 (30%), Positives = 16/30 (53%) Query: 134 PDLKHPTDHGHKPQEQTHKSQEAPKIPDSK 163 P ++ H PQ + KSQ+ P++ +K Sbjct: 90 PAESESSERRHTPQTNSQKSQKTPRLSSNK 119 >SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase complex alpha subunit Mas2|Schizosaccharomyces pombe|chr 2|||Manual Length = 494 Score = 24.6 bits (51), Expect = 8.5 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 5/55 (9%) Query: 14 ALLAMANAQDPVKVVENADSVRDAKKRYGVNVVDNNNPGHADPFFAQPTVGNGYE 68 AL + + QDP + VR K + GV V + PGH G+ YE Sbjct: 31 ALKSFYSTQDPA-----LNEVRTEKLKNGVTYVCDPRPGHFSGLGVYVKAGSRYE 80 Database: spombe Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.314 0.136 0.409 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,000,346 Number of Sequences: 5004 Number of extensions: 48691 Number of successful extensions: 80 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 76 Number of HSP's gapped (non-prelim): 9 length of query: 178 length of database: 2,362,478 effective HSP length: 68 effective length of query: 110 effective length of database: 2,022,206 effective search space: 222442660 effective search space used: 222442660 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 42 (21.9 bits) S2: 51 (24.6 bits)
- SilkBase 1999-2023 -