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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001860-TA|BGIBMGA001860-PA|undefined
         (178 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c...    29   0.40 
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    28   0.92 
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    27   1.6  
SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|...    26   2.8  
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...    26   3.7  
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    25   4.9  
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    25   6.5  
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    25   6.5  
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida...    25   8.5  

>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 219

 Score = 29.1 bits (62), Expect = 0.40
 Identities = 14/48 (29%), Positives = 25/48 (52%)

Query: 13  LALLAMANAQDPVKVVENADSVRDAKKRYGVNVVDNNNPGHADPFFAQ 60
           LAL+A+A     V     +   +DAK+R+   + D+N+ G    F ++
Sbjct: 164 LALVAVAIGLTSVNTAAYSRCDKDAKRRWATELADSNSSGFVSRFLSR 211


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 10/90 (11%)

Query: 82  DYNPNGNG-YEPIEILYIKSAGIIFSEKEIDISTCPDLRMELPSTAKPLDH---DVPDLK 137
           D+N  GNG Y        KS   + SE  + +ST   + ++     K L     ++  L+
Sbjct: 406 DFNLKGNGRYNE------KSQIAVPSEIRVQLSTLDAILLQFEHLRKELTQARKEIQILR 459

Query: 138 HPTDHGHKPQEQTHKSQEAPKIPDSKDNKD 167
           H + +G +   ++ K+    K  D  +NK+
Sbjct: 460 HTSQNGDQESNESSKNAITTKTTDKGNNKE 489


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 60  QPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIEILYIKSA 101
           Q  +GN  E ++N  Y VNPP   NP  +  +  E  Y  SA
Sbjct: 409 QQLLGNSNEVVEN--YDVNPPLPLNPLPSNTQQSESTYEYSA 448


>SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 403

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 12/50 (24%), Positives = 18/50 (36%)

Query: 22  QDPVKVVENADSVRDAKKRYGVNVVDNNNPGHADPFFAQPTVGNGYEPID 71
           Q P     N  +       +G N        +  P F+  TV N  +P+D
Sbjct: 72  QQPTTSFSNTTTNAPQSTVFGQNAASRTGNSNTQPLFSWSTVNNPTKPVD 121


>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 106 SEKEIDISTCPDLRMELPSTAKPLDHDVPDLKHPTDHGHKPQEQTHK--SQEAPKIPDS 162
           S K I+    PDL  E   +A       PD K P     KP+    +   Q  PK  ++
Sbjct: 152 SSKPIEEKPMPDLGAEQKESAPSSTKPAPDAKEPEFSSPKPKPAKSEPVKQSKPKATET 210


>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 109 EIDISTCPDLRM-ELPSTAKPLDHDVPDLKHPTDHGHKPQEQTHKSQEAPKIPDSKDNKD 167
           E ++ T P L + E     +PL    PDL HP  H    +       +  ++  S DNK 
Sbjct: 354 ESEVLTIPHLGLQEREFVLRPLLALSPDLVHPYTHQPLQEALDKLPSQGIRLYSSFDNKK 413

Query: 168 LPN 170
           + N
Sbjct: 414 IIN 416


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 48  NNNPGHADPFFAQPTVGNGYEPIDNRPYIVNPPKDYNPNGNGY 90
           NN+P   +  + Q   G G +  D  PY ++P   Y P G  Y
Sbjct: 172 NNSPYRPEDAYFQ-LQGAGVKA-DINPYNLSPYSQYGPEGTAY 212


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 9/30 (30%), Positives = 16/30 (53%)

Query: 134 PDLKHPTDHGHKPQEQTHKSQEAPKIPDSK 163
           P     ++  H PQ  + KSQ+ P++  +K
Sbjct: 90  PAESESSERRHTPQTNSQKSQKTPRLSSNK 119


>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing
          peptidase complex alpha subunit
          Mas2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 5/55 (9%)

Query: 14 ALLAMANAQDPVKVVENADSVRDAKKRYGVNVVDNNNPGHADPFFAQPTVGNGYE 68
          AL +  + QDP       + VR  K + GV  V +  PGH          G+ YE
Sbjct: 31 ALKSFYSTQDPA-----LNEVRTEKLKNGVTYVCDPRPGHFSGLGVYVKAGSRYE 80


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.136    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,000,346
Number of Sequences: 5004
Number of extensions: 48691
Number of successful extensions: 80
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 76
Number of HSP's gapped (non-prelim): 9
length of query: 178
length of database: 2,362,478
effective HSP length: 68
effective length of query: 110
effective length of database: 2,022,206
effective search space: 222442660
effective search space used: 222442660
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 51 (24.6 bits)

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