Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001860-TA|BGIBMGA001860-PA|undefined
         (178 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13497| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.71 
SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                29   1.6  
SB_42040| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_33496| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82)                29   2.9  
SB_47835| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_59755| Best HMM Match : SAM_PNT (HMM E-Value=2.8)                   28   3.8  
SB_27571| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042)                 28   5.0  
SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)           28   5.0  
SB_49422| Best HMM Match : GPS (HMM E-Value=1.9)                       27   6.6  
SB_35651| Best HMM Match : NUMOD3 (HMM E-Value=3.2)                    27   6.6  
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)               27   6.6  
SB_28976| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   8.7  
SB_24843| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_13497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 434

 Score = 30.7 bits (66), Expect = 0.71
 Identities = 44/154 (28%), Positives = 61/154 (39%), Gaps = 13/154 (8%)

Query: 10  IFVLALLAMANAQDPVKVVENADSVRDAKKRYGVNVVDNNNPGHADPFFAQPTVGNG-YE 68
           I V  L+++   + P + VENA    D +KRYG +VV   + G  DP  A     N  +E
Sbjct: 110 IVVRYLVSIDRKKGPAEAVENAQLAVDYRKRYG-DVVCGVDLG-GDP--AVSIRANALFE 165

Query: 69  PIDNRPYIVNPPKDYNPNGNGYEPIEILYIKSAGIIFSEKEIDIS-TCPDLRMELPSTAK 127
            ID + Y    P+   P GN + P  I   KS      E   D     PD+  +    A 
Sbjct: 166 TIDRKLYF---PEVSTP-GNPFLPDAIADRKSR---LPEVAADRKPAAPDITADRKPPAT 218

Query: 128 PLDHDVPDLKHPTDHGHKPQEQTHKSQEAPKIPD 161
            +  D            KP  Q   +Q   + PD
Sbjct: 219 DISADRKPAAPDVTADRKPAMQDLPAQAPREFPD 252


>SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 1021

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 48  NNNPGHADPFFAQPTVGNGY--EPIDNRPYIVNPPKD--YNPNGNGYEP 92
           N  PG  DP+  QP   + Y  +P  + PYI  P +D  YN      +P
Sbjct: 691 NKQPGRDDPYIKQPGRDDPYIKQPGRDDPYIKQPGRDDPYNKQPGRDDP 739


>SB_42040| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 6/120 (5%)

Query: 48  NNNPGHADPFFAQPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIEILYIKSAGIIFSE 107
           NN P H +       + N  + +DN+PY +N   D+  N   +   +  ++ +     + 
Sbjct: 205 NNKPDHLNKMSEH--LNNKPDHLDNKPYHLNNKPDHRNNKPDHLNNKPEHLNNKPDHLNN 262

Query: 108 KEIDISTCPDLRMELPSTAKPLDHDVPDLKHPTDH-GHKPQEQTHKSQEAPKIPDSKDNK 166
           K   ++  PD    L +    L++    L +  +H  +KP    +K       PD  +NK
Sbjct: 263 KPDHLNNKPD---HLNNKPDHLNNKPDHLNNKPNHLYYKPDHLNNKPNHLNNKPDHLNNK 319


>SB_33496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1082

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 8/79 (10%)

Query: 22  QDPVKVVENADSVRDAKKRYGVNVVDNNNPGHADPFFAQPTVGNGYEPIDNRPYIVNPPK 81
           Q   K  E + S  D  K   ++  DN+  GH+ P +  P++G   E         +   
Sbjct: 773 QGLAKAAEPSVSKVDGLKNLNISQHDNSELGHSSPNYVCPSLGQSREE--------SFQG 824

Query: 82  DYNPNGNGYEPIEILYIKS 100
               NGN   P+E+  I S
Sbjct: 825 QRTANGNNINPVEVHRITS 843


>SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82)
          Length = 883

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 107 EKEIDISTCPDLRMELPSTAKPLDHDVPDLKHPTDHG--HKPQEQTHKSQEAPKIPDSKD 164
           E E D  T  D + E P    P++ + P     ++      P +   + + A    DSKD
Sbjct: 467 EGEEDEKTKHDAKTETPMEDVPVERETPGTVTSSEEQSTRSPSDSRFEEEGAEAKSDSKD 526

Query: 165 NKDLP 169
           N+ +P
Sbjct: 527 NEQVP 531


>SB_47835| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 134 PD-LKHPTDHGHKPQEQTHKSQEAPKIPDSKDNK 166
           PD L +  DH H  ++  H S   P  PD   NK
Sbjct: 28  PDHLNNKPDHVHNKRDHVHMSDHVPSKPDHVHNK 61


>SB_59755| Best HMM Match : SAM_PNT (HMM E-Value=2.8)
          Length = 650

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 90  YEPIEILYIKSAG-IIFSEKEIDISTCPDLRMELPSTAKPLDHDVPD 135
           Y+   + ++ S G  IFSE E D+       MELPS  +  D D PD
Sbjct: 299 YKSGRMAHVHSEGQAIFSENEDDLGPLSPTLMELPSEPEE-DEDNPD 344


>SB_27571| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 102

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 15/42 (35%), Positives = 20/42 (47%)

Query: 56 PFFAQPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIEILY 97
          PF  Q +    Y P++    I   P D +  G+GYE  E LY
Sbjct: 39 PFAKQHSEDAQYAPLNPGTRIATIPGDRDKKGHGYEMEEDLY 80


>SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042)
          Length = 792

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 5/41 (12%)

Query: 109 EIDISTCPDLRMELPSTAKPLDHDVPDLKHPTDHGHKPQEQ 149
           E+D+ TC    M+     +P+D   P + HP  HG  P ++
Sbjct: 214 EVDLITCHGHPMD-----RPMDPGGPRMDHPMGHGGPPMDR 249


>SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)
          Length = 1806

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 114 TCPDLRMELPSTAKPLDHDVPDLKHPTDHGHKPQEQTHKSQEAPKIPDSKDN 165
           T PD R + P   +    D PD + P       QEQT    +  K+ + + N
Sbjct: 921 TKPDQRKDKPDQVQAKSRDKPDSEQP----QPDQEQTDPKHDGQKVTEKETN 968


>SB_49422| Best HMM Match : GPS (HMM E-Value=1.9)
          Length = 352

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 145 KPQEQTHKSQEAPKIPDSKDNKDLPNVG 172
           K +E+T++ +E PKIP S   +   N G
Sbjct: 225 KDEEKTYRKEETPKIPKSHTKQPKANHG 252


>SB_35651| Best HMM Match : NUMOD3 (HMM E-Value=3.2)
          Length = 228

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 6/62 (9%)

Query: 107 EKEID-ISTCPDLRMELPSTAKPLDHDVPDLKHPTDHGHKPQEQTHKSQEAPKIPDSKDN 165
           +K +D   T  D R + P    P+D       H  DH HK     HK Q+      SKD+
Sbjct: 43  QKRLDKYKTIEDFRKD-PMNQFPIDPYHHKKGHHRDHHHKD----HKDQKDHAKDQSKDH 97

Query: 166 KD 167
           KD
Sbjct: 98  KD 99


>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
          Length = 1467

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 50  NPGHADPFFAQPTVGNGYEPIDNRPYIVNP---PKDYNPNGNGYEP 92
           +PG   P +  PT G+   P    PYI +P      Y+P+   + P
Sbjct: 376 SPGGFSPSWMSPTPGSPVSPGPTSPYIPSPAAASPGYSPSSPAFMP 421


>SB_28976| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 277

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/20 (55%), Positives = 12/20 (60%)

Query: 143 GHKPQEQTHKSQEAPKIPDS 162
           G KPQ QTHK Q  P   D+
Sbjct: 20  GKKPQSQTHKKQSKPAKVDT 39


>SB_24843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 265

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 146 PQEQTHKSQEAPKIPDSKDNKD 167
           P EQT +S+E P+  DS+++ D
Sbjct: 10  PPEQTEQSEEPPQTEDSQESPD 31


>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 797

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 53  HADPFFAQPTVGNGYEPIDN-----RPYIVNPPKDYN-PNGNGYE 91
           H  PF  QP    GY+   N     + Y  +P + YN P+  GY+
Sbjct: 222 HKGPFLHQPVFHGGYQGPQNQGFTGKQYSQHPQQGYNQPSNPGYQ 266


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.136    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,258,037
Number of Sequences: 59808
Number of extensions: 355936
Number of successful extensions: 615
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 606
Number of HSP's gapped (non-prelim): 18
length of query: 178
length of database: 16,821,457
effective HSP length: 78
effective length of query: 100
effective length of database: 12,156,433
effective search space: 1215643300
effective search space used: 1215643300
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)