Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001860-TA|BGIBMGA001860-PA|undefined
(178 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5 ... 33 0.11
At3g42460.1 68416.m04398 hypothetical protein several hypothetic... 31 0.58
At1g53080.1 68414.m06010 legume lectin family protein 31 0.58
At5g61610.1 68418.m07731 glycine-rich protein / oleosin similar ... 29 1.8
At5g05490.2 68418.m00593 cohesion family protein SYN1, splice va... 29 2.3
At5g05490.1 68418.m00592 cohesion family protein SYN1, splice va... 29 2.3
At1g05470.1 68414.m00556 endonuclease/exonuclease/phosphatase fa... 29 2.3
At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein heli... 28 3.1
At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product... 28 4.1
At5g28610.1 68418.m03492 expressed protein 27 5.4
At4g34430.3 68417.m04892 DNA-binding family protein contains Pfa... 27 5.4
At1g15140.3 68414.m01810 oxidoreductase NAD-binding domain-conta... 27 5.4
At1g15140.2 68414.m01809 oxidoreductase NAD-binding domain-conta... 27 5.4
At1g15140.1 68414.m01808 oxidoreductase NAD-binding domain-conta... 27 5.4
At5g38190.1 68418.m04602 myosin heavy chain-related 27 7.1
At5g36780.1 68418.m04406 hypothetical protein 27 7.1
At5g36690.1 68418.m04391 hypothetical protein 27 7.1
At3g61950.2 68416.m06958 basic helix-loop-helix (bHLH) family pr... 27 7.1
At3g61950.1 68416.m06957 basic helix-loop-helix (bHLH) family pr... 27 7.1
At1g17380.1 68414.m02120 expressed protein 27 7.1
At3g01490.1 68416.m00073 protein kinase, putative similar to ATM... 27 9.4
At2g43970.2 68415.m05468 La domain-containing protein contains P... 27 9.4
At2g32210.1 68415.m03936 expressed protein 27 9.4
At2g30040.1 68415.m03653 protein kinase family protein contains ... 27 9.4
>At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5
family protein contains Pfam domain PF04153: NOT2 / NOT3
/ NOT5 family
Length = 843
Score = 33.1 bits (72), Expect = 0.11
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
Query: 61 PTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIEILYIKSAGIIFSEKEIDISTCPDLRM 120
P G G I N+P PP NG+ + I+ E + T P +M
Sbjct: 377 PLRGIGRVGIPNQPQPSQPPSPIPANGSRISATSAAEVAKRNIMGVESNVQPLTSPLSKM 436
Query: 121 ELPSTAKPLDHDVPDLKHPTD 141
LP TAK D D +P D
Sbjct: 437 VLPPTAKGNDGTASD-SNPGD 456
>At3g42460.1 68416.m04398 hypothetical protein several
hypothetical proteins - Arabidopsis thaliana
Length = 202
Score = 30.7 bits (66), Expect = 0.58
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 26 KVVENADSVRDAKKRYGVNVVDNNNPGHADPFFAQPTVGNGYEPIDN 72
KV+ N+D V+ YG+N++D DP P N + DN
Sbjct: 50 KVIPNSDPVKTTSAEYGINLMDKTVVTSGDP--NTPIKFNNFTSFDN 94
>At1g53080.1 68414.m06010 legume lectin family protein
Length = 283
Score = 30.7 bits (66), Expect = 0.58
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 48 NNNPGHADPFFAQPTVGNGYEPIDNRPY--IVNPPKDYNPNGN 88
N NPGH F PTV Y+ R + +VN + NPN +
Sbjct: 106 NPNPGHGIAFIVVPTVAYEYDQDSTRGFLGLVNLTTNGNPNNH 148
>At5g61610.1 68418.m07731 glycine-rich protein / oleosin similar to
variable surface lipoprotein Vsp422-3 (GI:15384285)
[Mycoplasma bovis]; similar to glycine-rich protein
atGRP-6, Arabidopsis thaliana, PIR:T49893
Length = 225
Score = 29.1 bits (62), Expect = 1.8
Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 1/93 (1%)
Query: 78 NPPKDYNPNGNGYEPIEILYIKSAGIIFSEKEIDISTCPDLRMELPSTAKPLDHDVPDLK 137
NP K+ P P + K ++ +K ++ P + P KP + P K
Sbjct: 116 NPLKEDKPPERDKLPRKDKPSKEDNLLKGDKPVEEDKLPAEEEKPPQKDKPAEGHKPPQK 175
Query: 138 HPTDHGHKPQEQTHKSQ-EAPKIPDSKDNKDLP 169
G KP E+ Q + P D +D+P
Sbjct: 176 DKPAEGDKPVEEDKPPQKDKPAEGDKHVEEDMP 208
>At5g05490.2 68418.m00593 cohesion family protein SYN1, splice
variant 1 (SYN1) identical to SYN1 splice variant 1
[Arabidopsis thaliana] GI:6453715
Length = 617
Score = 28.7 bits (61), Expect = 2.3
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 104 IFSEKEIDISTCPDLRMELPST---AKPLDHDVPDLKHPTDHGHKPQEQTHK-----SQE 155
I + E +++ P E+P+T + P HD+P+ +PT + Q++ + E
Sbjct: 199 IEGDDETQMNSNPREGAEIPTTLIPSPPRHHDIPEGVNPTSPQRQEQQENRRDGFAEQME 258
Query: 156 APKIPDSKDNKDLP 169
IPD K+ D P
Sbjct: 259 EQNIPD-KEEHDRP 271
>At5g05490.1 68418.m00592 cohesion family protein SYN1, splice
variant 1 (SYN1) identical to SYN1 splice variant 1
[Arabidopsis thaliana] GI:6453715
Length = 627
Score = 28.7 bits (61), Expect = 2.3
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 104 IFSEKEIDISTCPDLRMELPST---AKPLDHDVPDLKHPTDHGHKPQEQTHK-----SQE 155
I + E +++ P E+P+T + P HD+P+ +PT + Q++ + E
Sbjct: 209 IEGDDETQMNSNPREGAEIPTTLIPSPPRHHDIPEGVNPTSPQRQEQQENRRDGFAEQME 268
Query: 156 APKIPDSKDNKDLP 169
IPD K+ D P
Sbjct: 269 EQNIPD-KEEHDRP 281
>At1g05470.1 68414.m00556 endonuclease/exonuclease/phosphatase
family protein simlar to inositol polyphosphate
5-phosphatase I (GI:10444261) and II (GI:10444263)
[Arabidopsis thaliana]; contains Pfam profile PF03372:
Endonuclease/Exonuclease/phosphatase family
Length = 585
Score = 28.7 bits (61), Expect = 2.3
Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 9/118 (7%)
Query: 55 DPFFAQPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIEILYIKSAGIIFSEKEIDIST 114
DP QP + + D R + + P D++P+ G +S + D S
Sbjct: 183 DPSIPQPGLDRRFSVCD-RVFFSHRPSDFDPSFRGSSS------SHRPSDYSRRPSDYSR 235
Query: 115 CPDLRMELPS--TAKPLDHDVPDLKHPTDHGHKPQEQTHKSQEAPKIPDSKDNKDLPN 170
P PS + +P D D P+D+ +P + + S + D D P+
Sbjct: 236 RPSDYSRRPSDYSRRPSDSRPSDYSRPSDYYSRPSDYSRPSDFSRSSDDDNGLGDSPS 293
>At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein
helicase, putative similar to SP|O75643 U5 small nuclear
ribonucleoprotein 200 kDa helicase {Homo sapiens};
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF02889:
Sec63 domain
Length = 2171
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 79 PPKDYNPNGNGYEPIEILYIKSAGIIFSEKEIDISTCPD 117
PP Y +G GY+ + + ++ S + +EK + I+ PD
Sbjct: 456 PPGSYRSHGKGYDEVHVPWV-SKKVDRNEKLVKITEMPD 493
>At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product
[Arabidopsis thaliana] GI:871782
Length = 748
Score = 27.9 bits (59), Expect = 4.1
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 143 GHKPQEQTHKSQ-EAPKIPDSKDNKDLPNVGQMGG 176
G QE+ HK+ E P++PD + L + +M G
Sbjct: 510 GSSEQEEQHKANNEPPELPDESQSFSLAEISRMKG 544
>At5g28610.1 68418.m03492 expressed protein
Length = 123
Score = 27.5 bits (58), Expect = 5.4
Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 107 EKEIDISTCPDLRMELPSTAKPLDHDVPDLKHPTDHGHKPQEQTHKSQEAPKIPDSKDNK 166
EK+ D R ++ + L + +KHP HG QE+ + E ++ + ++ +
Sbjct: 37 EKDEDKKKEGSKREKIAAAMVGLGATLKKVKHPRHHGSGGQEEQEGAAEEEEVEEEEEEE 96
Query: 167 DLPNVG--QMGGK 177
+ + G + GGK
Sbjct: 97 EEDDGGDEEEGGK 109
>At4g34430.3 68417.m04892 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 983
Score = 27.5 bits (58), Expect = 5.4
Identities = 15/71 (21%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 100 SAGIIFSEKEIDISTCPDLRMELPSTAKPLDHDVPDLKHPTDHGHKPQEQTHKSQEAPKI 159
++G++ + + I P + P+ +K D + D D+ HK + KS++A ++
Sbjct: 577 NSGMLLATRHCYILEDPPDNKKDPTKSKSADAEGND-----DNSHKDDQPEEKSKKAEEV 631
Query: 160 PDSKDNKDLPN 170
+ D++++P+
Sbjct: 632 SLNSDDREMPD 642
>At1g15140.3 68414.m01810 oxidoreductase NAD-binding
domain-containing protein Contains Pfam profile PF00175:
Oxidoreductase NAD-binding domain; ESTs gb|H76345 and
gb|AA651465 come from this gene
Length = 271
Score = 27.5 bits (58), Expect = 5.4
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 90 YEPIEILYIKSAGIIFSEKEIDISTCPDLRMELPSTAKPLDHDVPDLKHPT 140
+ P + I+SA IDIS PDL + L VPD++ P+
Sbjct: 58 WTPAPLSLIESAAESLFHISIDISNAPDLVASYTRPGQYLQIRVPDVEKPS 108
>At1g15140.2 68414.m01809 oxidoreductase NAD-binding
domain-containing protein Contains Pfam profile PF00175:
Oxidoreductase NAD-binding domain; ESTs gb|H76345 and
gb|AA651465 come from this gene
Length = 271
Score = 27.5 bits (58), Expect = 5.4
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 90 YEPIEILYIKSAGIIFSEKEIDISTCPDLRMELPSTAKPLDHDVPDLKHPT 140
+ P + I+SA IDIS PDL + L VPD++ P+
Sbjct: 58 WTPAPLSLIESAAESLFHISIDISNAPDLVASYTRPGQYLQIRVPDVEKPS 108
>At1g15140.1 68414.m01808 oxidoreductase NAD-binding
domain-containing protein Contains Pfam profile PF00175:
Oxidoreductase NAD-binding domain; ESTs gb|H76345 and
gb|AA651465 come from this gene
Length = 295
Score = 27.5 bits (58), Expect = 5.4
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 90 YEPIEILYIKSAGIIFSEKEIDISTCPDLRMELPSTAKPLDHDVPDLKHPT 140
+ P + I+SA IDIS PDL + L VPD++ P+
Sbjct: 58 WTPAPLSLIESAAESLFHISIDISNAPDLVASYTRPGQYLQIRVPDVEKPS 108
>At5g38190.1 68418.m04602 myosin heavy chain-related
Length = 969
Score = 27.1 bits (57), Expect = 7.1
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 109 EIDISTCPDLRMELPSTAKPLD-HDVPDLKHPTDHGHKPQEQTHKSQEAPK 158
++D + D E P+D VP LKH + KPQ+Q KS PK
Sbjct: 268 KVDRNLVEDPSAETLREQAPIDWKQVPCLKHKKQNKRKPQKQ--KSSARPK 316
>At5g36780.1 68418.m04406 hypothetical protein
Length = 576
Score = 27.1 bits (57), Expect = 7.1
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 68 EPIDNRPYIVNPPKDYNPNGNGYEPIEILYI-KSAGIIFSEKEIDISTCPDLRMELPSTA 126
E +D+ YI +Y G E + K GII SEKE I+ + +EL
Sbjct: 165 EELDHLSYIAQYQIEYGSIGLEEEDWMLKETEKPDGIILSEKEASINRVKSMALELNEVK 224
Query: 127 KPLD 130
LD
Sbjct: 225 NELD 228
>At5g36690.1 68418.m04391 hypothetical protein
Length = 576
Score = 27.1 bits (57), Expect = 7.1
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 68 EPIDNRPYIVNPPKDYNPNGNGYEPIEILYI-KSAGIIFSEKEIDISTCPDLRMELPSTA 126
E +D+ YI +Y G E + K GII SEKE I+ + +EL
Sbjct: 165 EELDHLSYIAQYQIEYGSIGLEEEDWMLKETEKPDGIILSEKEASINRVKSMALELNEVK 224
Query: 127 KPLD 130
LD
Sbjct: 225 NELD 228
>At3g61950.2 68416.m06958 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 307
Score = 27.1 bits (57), Expect = 7.1
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 97 YIKSAGIIFSEKEIDISTCPDLRMELPS-TAKPLDHDVPDLKHPTDHGHKPQEQTHKSQE 155
+++ A S +EI S M LPS T+ PL K +H PQE T + ++
Sbjct: 55 FMEGANQAVSSQEIPFSQA---NMTLPSSTSSPLSAH-SRRKRKINH-LLPQEMTREKRK 109
Query: 156 APKIPDSKDNKDLPN 170
K SK+N+++ N
Sbjct: 110 RRKTKPSKNNEEIEN 124
>At3g61950.1 68416.m06957 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 358
Score = 27.1 bits (57), Expect = 7.1
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 97 YIKSAGIIFSEKEIDISTCPDLRMELPS-TAKPLDHDVPDLKHPTDHGHKPQEQTHKSQE 155
+++ A S +EI S M LPS T+ PL K +H PQE T + ++
Sbjct: 106 FMEGANQAVSSQEIPFSQA---NMTLPSSTSSPLSAH-SRRKRKINH-LLPQEMTREKRK 160
Query: 156 APKIPDSKDNKDLPN 170
K SK+N+++ N
Sbjct: 161 RRKTKPSKNNEEIEN 175
>At1g17380.1 68414.m02120 expressed protein
Length = 274
Score = 27.1 bits (57), Expect = 7.1
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 133 VPDLKHPTDHGHKPQEQTHKSQE 155
+PDL PTD+ H +EQ + ++
Sbjct: 153 LPDLNEPTDNNHLTKEQQQQQEQ 175
>At3g01490.1 68416.m00073 protein kinase, putative similar to
ATMRK1 [Arabidopsis thaliana] gi|2351097|dbj|BAA22079
Length = 411
Score = 26.6 bits (56), Expect = 9.4
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 28 VENADSVRDAKKRYGVNVVDNNNPGHADPFFAQPTVGNGYEPIDN 72
+E S+ D + + NN GH F +P +G GY +N
Sbjct: 38 MEKRKSLSDGEDNVNNTRHNQNNFGHRQLVFQRPLLGGGYSNNNN 82
>At2g43970.2 68415.m05468 La domain-containing protein contains Pfam
profile PF05383: La domain
Length = 529
Score = 26.6 bits (56), Expect = 9.4
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 86 NGNGYEPIEILYIKSAGIIFSEKEIDISTCPDLRMELPSTAKPLDHDVPDLKHPTDHGHK 145
NG+G P KS G +FS K ++S + R L L H + K G K
Sbjct: 322 NGSGAPPAARSAAKSDGTLFSNKVTELSEAGNWRSGL-KVRLMLKHQTKEPKQGQGRGRK 380
Query: 146 PQEQTHKSQE 155
+ + +E
Sbjct: 381 GHDADVEHEE 390
>At2g32210.1 68415.m03936 expressed protein
Length = 71
Score = 26.6 bits (56), Expect = 9.4
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 69 PIDNRPYIVNPPKDYNPNGNGYEPIEILYIKSAG 102
P+ PY+ PP Y N + + + KS G
Sbjct: 17 PVSTGPYVAPPPLGYPTNDTSHATVATVETKSKG 50
>At2g30040.1 68415.m03653 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 463
Score = 26.6 bits (56), Expect = 9.4
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Query: 99 KSAGIIFSEKEIDISTCPDLRMELPSTAKPLDHDVPDLKHPTDH 142
K G +F+ K ID++TC LPS A+ L++++ L+ H
Sbjct: 37 KIDGGLFAVKSIDLATC------LPSQAESLENEIVILRSMKSH 74
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.314 0.136 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,115,133
Number of Sequences: 28952
Number of extensions: 248092
Number of successful extensions: 465
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 455
Number of HSP's gapped (non-prelim): 24
length of query: 178
length of database: 12,070,560
effective HSP length: 77
effective length of query: 101
effective length of database: 9,841,256
effective search space: 993966856
effective search space used: 993966856
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 56 (26.6 bits)
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