Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001860-TA|BGIBMGA001860-PA|undefined
(178 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c... 29 0.40
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 28 0.92
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb... 27 1.6
SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|... 26 2.8
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon... 26 3.7
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro... 25 4.9
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe... 25 6.5
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2... 25 6.5
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida... 25 8.5
>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 219
Score = 29.1 bits (62), Expect = 0.40
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 13 LALLAMANAQDPVKVVENADSVRDAKKRYGVNVVDNNNPGHADPFFAQ 60
LAL+A+A V + +DAK+R+ + D+N+ G F ++
Sbjct: 164 LALVAVAIGLTSVNTAAYSRCDKDAKRRWATELADSNSSGFVSRFLSR 211
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 27.9 bits (59), Expect = 0.92
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 10/90 (11%)
Query: 82 DYNPNGNG-YEPIEILYIKSAGIIFSEKEIDISTCPDLRMELPSTAKPLDH---DVPDLK 137
D+N GNG Y KS + SE + +ST + ++ K L ++ L+
Sbjct: 406 DFNLKGNGRYNE------KSQIAVPSEIRVQLSTLDAILLQFEHLRKELTQARKEIQILR 459
Query: 138 HPTDHGHKPQEQTHKSQEAPKIPDSKDNKD 167
H + +G + ++ K+ K D +NK+
Sbjct: 460 HTSQNGDQESNESSKNAITTKTTDKGNNKE 489
>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 730
Score = 27.1 bits (57), Expect = 1.6
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 60 QPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIEILYIKSA 101
Q +GN E ++N Y VNPP NP + + E Y SA
Sbjct: 409 QQLLGNSNEVVEN--YDVNPPLPLNPLPSNTQQSESTYEYSA 448
>SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|chr
2|||Manual
Length = 403
Score = 26.2 bits (55), Expect = 2.8
Identities = 12/50 (24%), Positives = 18/50 (36%)
Query: 22 QDPVKVVENADSVRDAKKRYGVNVVDNNNPGHADPFFAQPTVGNGYEPID 71
Q P N + +G N + P F+ TV N +P+D
Sbjct: 72 QQPTTSFSNTTTNAPQSTVFGQNAASRTGNSNTQPLFSWSTVNNPTKPVD 121
>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
of oxoglutarate dehydrogenase complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.8 bits (54), Expect = 3.7
Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 106 SEKEIDISTCPDLRMELPSTAKPLDHDVPDLKHPTDHGHKPQEQTHK--SQEAPKIPDS 162
S K I+ PDL E +A PD K P KP+ + Q PK ++
Sbjct: 152 SSKPIEEKPMPDLGAEQKESAPSSTKPAPDAKEPEFSSPKPKPAKSEPVKQSKPKATET 210
>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
6-
hydroxymethyldihydropteridinediphosphokinase/dihydroneop
terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 25.4 bits (53), Expect = 4.9
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 109 EIDISTCPDLRM-ELPSTAKPLDHDVPDLKHPTDHGHKPQEQTHKSQEAPKIPDSKDNKD 167
E ++ T P L + E +PL PDL HP H + + ++ S DNK
Sbjct: 354 ESEVLTIPHLGLQEREFVLRPLLALSPDLVHPYTHQPLQEALDKLPSQGIRLYSSFDNKK 413
Query: 168 LPN 170
+ N
Sbjct: 414 IIN 416
>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 738
Score = 25.0 bits (52), Expect = 6.5
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 48 NNNPGHADPFFAQPTVGNGYEPIDNRPYIVNPPKDYNPNGNGY 90
NN+P + + Q G G + D PY ++P Y P G Y
Sbjct: 172 NNSPYRPEDAYFQ-LQGAGVKA-DINPYNLSPYSQYGPEGTAY 212
>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 479
Score = 25.0 bits (52), Expect = 6.5
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 134 PDLKHPTDHGHKPQEQTHKSQEAPKIPDSK 163
P ++ H PQ + KSQ+ P++ +K
Sbjct: 90 PAESESSERRHTPQTNSQKSQKTPRLSSNK 119
>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing
peptidase complex alpha subunit
Mas2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 24.6 bits (51), Expect = 8.5
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 14 ALLAMANAQDPVKVVENADSVRDAKKRYGVNVVDNNNPGHADPFFAQPTVGNGYE 68
AL + + QDP + VR K + GV V + PGH G+ YE
Sbjct: 31 ALKSFYSTQDPA-----LNEVRTEKLKNGVTYVCDPRPGHFSGLGVYVKAGSRYE 80
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.136 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,000,346
Number of Sequences: 5004
Number of extensions: 48691
Number of successful extensions: 80
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 76
Number of HSP's gapped (non-prelim): 9
length of query: 178
length of database: 2,362,478
effective HSP length: 68
effective length of query: 110
effective length of database: 2,022,206
effective search space: 222442660
effective search space used: 222442660
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 51 (24.6 bits)
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