GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001860-TA|BGIBMGA001860-PA|undefined
         (178 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42391-1|AAC50402.1| 2022|Homo sapiens myosin-IXb protein.             33   0.55 
AB209997-1|BAE06079.1| 2028|Homo sapiens MYO9B variant protein p...    33   0.55 
BC014642-1|AAH14642.1|  780|Homo sapiens hypothetical protein MG...    29   6.8  
AK128330-1|BAC87387.1|  686|Homo sapiens protein ( Homo sapiens ...    29   6.8  
AK093037-1|BAC04027.1|  555|Homo sapiens protein ( Homo sapiens ...    29   6.8  
U58994-1|AAD10849.1|  407|Homo sapiens ladinin protein.                29   9.0  
EF025894-1|ABJ98522.1| 2721|Homo sapiens zonadhesin isoform 6 pr...    29   9.0  
AY830839-1|AAW52510.1| 2434|Homo sapiens serine/threonine protei...    29   9.0  
AY046055-6|AAL04412.1| 2601|Homo sapiens zonadhesin splice varia...    29   9.0  
AY046055-5|AAL04415.1| 2689|Homo sapiens zonadhesin splice varia...    29   9.0  
AY046055-4|AAL04414.1| 2624|Homo sapiens zonadhesin splice varia...    29   9.0  
AY046055-3|AAL04410.1| 2724|Homo sapiens zonadhesin splice varia...    29   9.0  
AY046055-2|AAL04411.1| 2812|Homo sapiens zonadhesin splice varia...    29   9.0  
AY046055-1|AAL04413.1| 2721|Homo sapiens zonadhesin splice varia...    29   9.0  
AF332980-1|AAK01436.1| 2721|Homo sapiens zonadhesin variant 6 pr...    29   9.0  
AF332979-1|AAK01435.1| 2601|Homo sapiens zonadhesin variant 5 pr...    29   9.0  
AF332978-1|AAK01434.1| 2624|Homo sapiens zonadhesin variant 4 pr...    29   9.0  
AF332977-1|AAK01433.1| 2812|Homo sapiens zonadhesin variant 3 pr...    29   9.0  
AF332976-1|AAK01432.1| 2689|Homo sapiens zonadhesin variant 2 pr...    29   9.0  
AF332975-1|AAK01431.1| 2724|Homo sapiens zonadhesin variant 1 pr...    29   9.0  
AB002301-1|BAA20762.1| 2137|Homo sapiens KIAA0303 protein.             29   9.0  

>U42391-1|AAC50402.1| 2022|Homo sapiens myosin-IXb protein.
          Length = 2022

 Score = 33.1 bits (72), Expect = 0.55
 Identities = 12/45 (26%), Positives = 25/45 (55%)

Query: 123  PSTAKPLDHDVPDLKHPTDHGHKPQEQTHKSQEAPKIPDSKDNKD 167
            PS   PL+H  P+ + P+     P ++T  ++   K+P S++ ++
Sbjct: 1105 PSDRSPLEHSSPEKEAPSPEKTLPPQKTVAAESHEKVPSSREKRE 1149


>AB209997-1|BAE06079.1| 2028|Homo sapiens MYO9B variant protein
            protein.
          Length = 2028

 Score = 33.1 bits (72), Expect = 0.55
 Identities = 12/45 (26%), Positives = 25/45 (55%)

Query: 123  PSTAKPLDHDVPDLKHPTDHGHKPQEQTHKSQEAPKIPDSKDNKD 167
            PS   PL+H  P+ + P+     P ++T  ++   K+P S++ ++
Sbjct: 1111 PSDRSPLEHSSPEKEAPSPEKTLPPQKTVAAESHEKVPSSREKRE 1155


>BC014642-1|AAH14642.1|  780|Homo sapiens hypothetical protein
           MGC15523 protein.
          Length = 780

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 14/46 (30%), Positives = 22/46 (47%)

Query: 130 DHDVPDLKHPTDHGHKPQEQTHKSQEAPKIPDSKDNKDLPNVGQMG 175
           D +VP+   P       +    + Q AP +PDS+  K  P  G++G
Sbjct: 513 DREVPEENKPPSRHAGGKAPGVQGQMAPPLPDSEREKQEPEQGEVG 558


>AK128330-1|BAC87387.1|  686|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46472 fis, clone THYMU3023400. ).
          Length = 686

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 14/46 (30%), Positives = 22/46 (47%)

Query: 130 DHDVPDLKHPTDHGHKPQEQTHKSQEAPKIPDSKDNKDLPNVGQMG 175
           D +VP+   P       +    + Q AP +PDS+  K  P  G++G
Sbjct: 431 DREVPEENKPPSRHAGGKAPGVQGQMAPPLPDSEREKQEPEQGEVG 476


>AK093037-1|BAC04027.1|  555|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35718 fis, clone TESTI2000616. ).
          Length = 555

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 14/46 (30%), Positives = 22/46 (47%)

Query: 130 DHDVPDLKHPTDHGHKPQEQTHKSQEAPKIPDSKDNKDLPNVGQMG 175
           D +VP+   P       +    + Q AP +PDS+  K  P  G++G
Sbjct: 288 DREVPEENKPPSRHAGGKAPGVQGQMAPPLPDSEREKQEPEQGEVG 333


>U58994-1|AAD10849.1|  407|Homo sapiens ladinin protein.
          Length = 407

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 113 STCPDLRMELPSTAKPLDHDVPDLKHPTDHGHKPQEQTHKSQEAPK 158
           S  P + ++LP T +P DH + D       G+ P  Q     EAP+
Sbjct: 334 SRLPPVTLQLPQTLQPQDHLLSDETQERKLGNNPNSQC--QHEAPR 377


>EF025894-1|ABJ98522.1| 2721|Homo sapiens zonadhesin isoform 6
           protein.
          Length = 2721

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 114 TCPDLRMELPSTAKPLDHDVPDLKHPTDHGHKPQEQTHKSQEAPKIPDSK 163
           T P  +  +PS    +  + P +  PT+    P E+T  S E P IP  K
Sbjct: 634 TIPSEKPTIPSEKPTISTEKPTV--PTEEPTTPTEETTTSMEEPVIPTEK 681


>AY830839-1|AAW52510.1| 2434|Homo sapiens serine/threonine protein
            kinase protein.
          Length = 2434

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 4/59 (6%)

Query: 123  PSTAKPL----DHDVPDLKHPTDHGHKPQEQTHKSQEAPKIPDSKDNKDLPNVGQMGGK 177
            PSTA+P     D   P   H     HKP+          K PD   +   P+VG   GK
Sbjct: 1978 PSTAEPSSSPQDPPKPVAAHSESSSHKPRPGPDPGPPKTKHPDRSLSSQKPSVGATKGK 2036


>AY046055-6|AAL04412.1| 2601|Homo sapiens zonadhesin splice variant
           5 protein.
          Length = 2601

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 114 TCPDLRMELPSTAKPLDHDVPDLKHPTDHGHKPQEQTHKSQEAPKIPDSK 163
           T P  +  +PS    +  + P +  PT+    P E+T  S E P IP  K
Sbjct: 634 TIPSEKPTIPSEKPTISTEKPTV--PTEEPTTPTEETTTSMEEPVIPTEK 681


>AY046055-5|AAL04415.1| 2689|Homo sapiens zonadhesin splice variant
           2 protein.
          Length = 2689

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 114 TCPDLRMELPSTAKPLDHDVPDLKHPTDHGHKPQEQTHKSQEAPKIPDSK 163
           T P  +  +PS    +  + P +  PT+    P E+T  S E P IP  K
Sbjct: 634 TIPSEKPTIPSEKPTISTEKPTV--PTEEPTTPTEETTTSMEEPVIPTEK 681


>AY046055-4|AAL04414.1| 2624|Homo sapiens zonadhesin splice variant
           4 protein.
          Length = 2624

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 114 TCPDLRMELPSTAKPLDHDVPDLKHPTDHGHKPQEQTHKSQEAPKIPDSK 163
           T P  +  +PS    +  + P +  PT+    P E+T  S E P IP  K
Sbjct: 634 TIPSEKPTIPSEKPTISTEKPTV--PTEEPTTPTEETTTSMEEPVIPTEK 681


>AY046055-3|AAL04410.1| 2724|Homo sapiens zonadhesin splice variant
           1 protein.
          Length = 2724

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 114 TCPDLRMELPSTAKPLDHDVPDLKHPTDHGHKPQEQTHKSQEAPKIPDSK 163
           T P  +  +PS    +  + P +  PT+    P E+T  S E P IP  K
Sbjct: 634 TIPSEKPTIPSEKPTISTEKPTV--PTEEPTTPTEETTTSMEEPVIPTEK 681


>AY046055-2|AAL04411.1| 2812|Homo sapiens zonadhesin splice variant
           3 protein.
          Length = 2812

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 114 TCPDLRMELPSTAKPLDHDVPDLKHPTDHGHKPQEQTHKSQEAPKIPDSK 163
           T P  +  +PS    +  + P +  PT+    P E+T  S E P IP  K
Sbjct: 634 TIPSEKPTIPSEKPTISTEKPTV--PTEEPTTPTEETTTSMEEPVIPTEK 681


>AY046055-1|AAL04413.1| 2721|Homo sapiens zonadhesin splice variant
           6 protein.
          Length = 2721

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 114 TCPDLRMELPSTAKPLDHDVPDLKHPTDHGHKPQEQTHKSQEAPKIPDSK 163
           T P  +  +PS    +  + P +  PT+    P E+T  S E P IP  K
Sbjct: 634 TIPSEKPTIPSEKPTISTEKPTV--PTEEPTTPTEETTTSMEEPVIPTEK 681


>AF332980-1|AAK01436.1| 2721|Homo sapiens zonadhesin variant 6
           protein.
          Length = 2721

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 114 TCPDLRMELPSTAKPLDHDVPDLKHPTDHGHKPQEQTHKSQEAPKIPDSK 163
           T P  +  +PS    +  + P +  PT+    P E+T  S E P IP  K
Sbjct: 634 TIPSEKPTIPSEKPTISTEKPTV--PTEEPTTPTEETTTSMEEPVIPTEK 681


>AF332979-1|AAK01435.1| 2601|Homo sapiens zonadhesin variant 5
           protein.
          Length = 2601

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 114 TCPDLRMELPSTAKPLDHDVPDLKHPTDHGHKPQEQTHKSQEAPKIPDSK 163
           T P  +  +PS    +  + P +  PT+    P E+T  S E P IP  K
Sbjct: 634 TIPSEKPTIPSEKPTISTEKPTV--PTEEPTTPTEETTTSMEEPVIPTEK 681


>AF332978-1|AAK01434.1| 2624|Homo sapiens zonadhesin variant 4
           protein.
          Length = 2624

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 114 TCPDLRMELPSTAKPLDHDVPDLKHPTDHGHKPQEQTHKSQEAPKIPDSK 163
           T P  +  +PS    +  + P +  PT+    P E+T  S E P IP  K
Sbjct: 634 TIPSEKPTIPSEKPTISTEKPTV--PTEEPTTPTEETTTSMEEPVIPTEK 681


>AF332977-1|AAK01433.1| 2812|Homo sapiens zonadhesin variant 3
           protein.
          Length = 2812

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 114 TCPDLRMELPSTAKPLDHDVPDLKHPTDHGHKPQEQTHKSQEAPKIPDSK 163
           T P  +  +PS    +  + P +  PT+    P E+T  S E P IP  K
Sbjct: 634 TIPSEKPTIPSEKPTISTEKPTV--PTEEPTTPTEETTTSMEEPVIPTEK 681


>AF332976-1|AAK01432.1| 2689|Homo sapiens zonadhesin variant 2
           protein.
          Length = 2689

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 114 TCPDLRMELPSTAKPLDHDVPDLKHPTDHGHKPQEQTHKSQEAPKIPDSK 163
           T P  +  +PS    +  + P +  PT+    P E+T  S E P IP  K
Sbjct: 634 TIPSEKPTIPSEKPTISTEKPTV--PTEEPTTPTEETTTSMEEPVIPTEK 681


>AF332975-1|AAK01431.1| 2724|Homo sapiens zonadhesin variant 1
           protein.
          Length = 2724

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 114 TCPDLRMELPSTAKPLDHDVPDLKHPTDHGHKPQEQTHKSQEAPKIPDSK 163
           T P  +  +PS    +  + P +  PT+    P E+T  S E P IP  K
Sbjct: 634 TIPSEKPTIPSEKPTISTEKPTV--PTEEPTTPTEETTTSMEEPVIPTEK 681


>AB002301-1|BAA20762.1| 2137|Homo sapiens KIAA0303 protein.
          Length = 2137

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 4/59 (6%)

Query: 123  PSTAKPL----DHDVPDLKHPTDHGHKPQEQTHKSQEAPKIPDSKDNKDLPNVGQMGGK 177
            PSTA+P     D   P   H     HKP+          K PD   +   P+VG   GK
Sbjct: 1681 PSTAEPSSSPQDPPKPVAAHSESSSHKPRPGPDPGPPKTKHPDRSLSSQKPSVGATKGK 1739


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.314    0.136    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,643,702
Number of Sequences: 224733
Number of extensions: 1463464
Number of successful extensions: 2272
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2251
Number of HSP's gapped (non-prelim): 37
length of query: 178
length of database: 73,234,838
effective HSP length: 85
effective length of query: 93
effective length of database: 54,132,533
effective search space: 5034325569
effective search space used: 5034325569
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 62 (29.1 bits)