Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001860-TA|BGIBMGA001860-PA|undefined
(178 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical pr... 31 0.47
Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical pr... 31 0.47
AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein. 31 0.47
U41510-8|AAK39385.1| 493|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z81103-7|CAB03211.3| 579|Caenorhabditis elegans Hypothetical pr... 29 1.4
Z81103-5|CAD56592.2| 550|Caenorhabditis elegans Hypothetical pr... 29 1.4
Z81088-12|CAD56587.2| 579|Caenorhabditis elegans Hypothetical p... 29 1.4
U80450-8|AAK77616.1| 949|Caenorhabditis elegans Temporarily ass... 29 2.5
Z80215-1|CAB02268.2| 282|Caenorhabditis elegans Hypothetical pr... 28 4.3
U80031-7|AAB37617.1| 67|Caenorhabditis elegans Hypothetical pr... 27 7.6
U18385-1|AAA62505.1| 276|Caenorhabditis elegans collagen protein. 27 7.6
>Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical
protein K04G2.8b protein.
Length = 1188
Score = 31.1 bits (67), Expect = 0.47
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 142 HGHKPQEQTHKSQEAPKIPDSKDNKDLPNVGQMGGKN 178
H + Q+Q K+QEA +P + D+ D+P MG ++
Sbjct: 577 HQIQQQQQMQKAQEADPVPPTDDDLDIPTSTVMGTRS 613
>Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical
protein K04G2.8a protein.
Length = 1186
Score = 31.1 bits (67), Expect = 0.47
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 142 HGHKPQEQTHKSQEAPKIPDSKDNKDLPNVGQMGGKN 178
H + Q+Q K+QEA +P + D+ D+P MG ++
Sbjct: 575 HQIQQQQQMQKAQEADPVPPTDDDLDIPTSTVMGTRS 611
>AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.
Length = 1186
Score = 31.1 bits (67), Expect = 0.47
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 142 HGHKPQEQTHKSQEAPKIPDSKDNKDLPNVGQMGGKN 178
H + Q+Q K+QEA +P + D+ D+P MG ++
Sbjct: 575 HQIQQQQQMQKAQEADPVPPTDDDLDIPTSTVMGTRS 611
>U41510-8|AAK39385.1| 493|Caenorhabditis elegans Hypothetical
protein ZC449.5 protein.
Length = 493
Score = 29.9 bits (64), Expect = 1.1
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 108 KEIDISTCPDLRMELPSTAKPLDHDVPDLKHPTDHGHKPQEQTHKSQEAPKIPDSKDNKD 167
KE ++T P+ E S+ P + P T +E T +S E PK D KD KD
Sbjct: 254 KEEKVTTTPEPSTE-ESSESPETSEEPQSSESTPTS---EESTEQSTEKPKKEDKKDKKD 309
>Z81103-7|CAB03211.3| 579|Caenorhabditis elegans Hypothetical
protein M04G12.4a protein.
Length = 579
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 60 QPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEP 92
QP VGN Y+P P +PP Y GY P
Sbjct: 91 QPLVGNSYDP----PVRFDPPYAYRATATGYMP 119
>Z81103-5|CAD56592.2| 550|Caenorhabditis elegans Hypothetical
protein M04G12.4b protein.
Length = 550
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 60 QPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEP 92
QP VGN Y+P P +PP Y GY P
Sbjct: 62 QPLVGNSYDP----PVRFDPPYAYRATATGYMP 90
>Z81088-12|CAD56587.2| 579|Caenorhabditis elegans Hypothetical
protein M04G12.4a protein.
Length = 579
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 60 QPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEP 92
QP VGN Y+P P +PP Y GY P
Sbjct: 91 QPLVGNSYDP----PVRFDPPYAYRATATGYMP 119
>U80450-8|AAK77616.1| 949|Caenorhabditis elegans Temporarily
assigned gene nameprotein 163, isoform c protein.
Length = 949
Score = 28.7 bits (61), Expect = 2.5
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 39 KRYGVNVVDNNNPGHADPFFAQPTVGNGYEPIDNRPYIVNPPKDYNP 85
+R VN VD + H P F + T Y+P +R +N +D P
Sbjct: 651 RRSSVNSVDTSEIIHHHPLFVKDTSKYWYKPTISREQAINMLRDKPP 697
>Z80215-1|CAB02268.2| 282|Caenorhabditis elegans Hypothetical
protein C36B1.3 protein.
Length = 282
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 140 TDHGHKPQEQTHKSQEAPKIPDSKDNK 166
+DH P++ T K EAP PD+K NK
Sbjct: 212 SDHSSLPEDSTEK--EAPFEPDNKPNK 236
>U80031-7|AAB37617.1| 67|Caenorhabditis elegans Hypothetical
protein B0554.1 protein.
Length = 67
Score = 27.1 bits (57), Expect = 7.6
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 1 MKFILCVLQIFVLALLAMANAQDPVKVVENADSVRDAKKRYGVNVVDNNNPGHAD 55
MKF C+LQIF + L + +P+ V E D +K + D+ PG D
Sbjct: 1 MKFTTCLLQIFAIIFLIAVISAEPI-VREKRGLREDIRK-----IKDSALPGFGD 49
>U18385-1|AAA62505.1| 276|Caenorhabditis elegans collagen protein.
Length = 276
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 130 DHDVPDLKHPTDHGHKPQEQTHKSQEAPKIPDSKDNKDLPN 170
D + PD++ DH + T SQ++ + D KD+ + P+
Sbjct: 124 DQEPPDVQDQQDHVENQEPST--SQDSQDVQDHKDHAEKPD 162
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.314 0.136 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,386,677
Number of Sequences: 27539
Number of extensions: 266729
Number of successful extensions: 517
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 512
Number of HSP's gapped (non-prelim): 12
length of query: 178
length of database: 12,573,161
effective HSP length: 77
effective length of query: 101
effective length of database: 10,452,658
effective search space: 1055718458
effective search space used: 1055718458
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)
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