GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001860-TA|BGIBMGA001860-PA|undefined
         (178 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.2  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   3.0  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   5.2  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   5.2  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   5.2  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   9.1  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 86  NGNGYEPIEILYIKSAGIIFSEKEIDISTCPDLRMELPSTAKPLDHDVPDLKHPTDHGHK 145
           +G  YE +E   + +   IF  +        D   E PS    L  + P+  HP  HG +
Sbjct: 32  DGGDYEVVESRELTNLVEIFDGRGTIFEGHDD--REQPSVYPLLRFENPETHHPIRHGRR 89


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 9/25 (36%), Positives = 11/25 (44%)

Query: 51  PGHADPFFAQPTVGNGYEPIDNRPY 75
           P  A P+  Q  +  G E I  R Y
Sbjct: 234 PNDAQPYIFQEVIDYGNEAISKREY 258


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 10/27 (37%), Positives = 13/27 (48%)

Query: 71  DNRPYIVNPPKDYNPNGNGYEPIEILY 97
           +N  Y  N   +YN N N Y   + LY
Sbjct: 92  NNNNYNNNNYNNYNYNNNNYNNYKKLY 118


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 8/32 (25%), Positives = 16/32 (50%)

Query: 142 HGHKPQEQTHKSQEAPKIPDSKDNKDLPNVGQ 173
           H H+ +    +S+   K P+S+D  +  N  +
Sbjct: 72  HTHEKKLVLERSKTKSKSPESRDRSNTSNTSK 103


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 9/14 (64%), Positives = 11/14 (78%)

Query: 3   FILCVLQIFVLALL 16
           FI+C L  FVLAL+
Sbjct: 381 FIVCWLPFFVLALV 394


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 149 QTHKSQEAPKIPDSKDNKDLPNVGQM 174
           QT   Q +P I  S DN+ L  + Q+
Sbjct: 395 QTDDHQNSPSIFISDDNQKLTGIVQI 420


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.136    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,888
Number of Sequences: 429
Number of extensions: 3389
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 178
length of database: 140,377
effective HSP length: 54
effective length of query: 124
effective length of database: 117,211
effective search space: 14534164
effective search space used: 14534164
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.4 bits)
S2: 41 (20.6 bits)