Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001859-TA|BGIBMGA001859-PA|IPR003593|AAA ATPase,
IPR013594|Dynein heavy chain, N-terminal region 1, IPR013602|Dynein
heavy chain, N-terminal region 2, IPR011704|ATPase associated with
various cellular activities, AAA-5, IPR004273|Dynein heavy chain
(4153 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g43900.1 68418.m05368 myosin heavy chain (MYA2) nearly identi... 37 0.25
At3g57060.1 68416.m06353 non-SMC condensin subunit, XCAP-D2/Cnd1... 37 0.34
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 36 0.44
At4g05060.1 68417.m00746 vesicle-associated membrane family prot... 35 1.4
At2g29890.1 68415.m03630 villin 1 (VLN1) nearly identical to vil... 35 1.4
At5g43740.2 68418.m05348 disease resistance protein (CC-NBS-LRR ... 34 2.4
At5g43740.1 68418.m05347 disease resistance protein (CC-NBS-LRR ... 34 2.4
At5g43730.1 68418.m05346 disease resistance protein (CC-NBS-LRR ... 33 4.1
At1g17140.2 68414.m02089 tropomyosin-related similar to Tropomyo... 33 4.1
At1g17140.1 68414.m02088 tropomyosin-related similar to Tropomyo... 33 4.1
At4g22940.1 68417.m03312 protein kinase family protein contains ... 33 5.5
At3g55310.1 68416.m06143 short-chain dehydrogenase/reductase (SD... 33 5.5
At3g25970.1 68416.m03236 pentatricopeptide (PPR) repeat-containi... 33 5.5
At1g63440.1 68414.m07174 copper-exporting ATPase, putative / res... 33 5.5
At4g15790.1 68417.m02403 expressed protein 32 7.2
At5g48600.1 68418.m06011 structural maintenance of chromosomes (... 32 9.5
At3g16620.1 68416.m02124 chloroplast outer membrane protein, put... 32 9.5
At1g77620.1 68414.m09037 expressed protein 32 9.5
At1g12150.1 68414.m01407 expressed protein contains Pfam profile... 32 9.5
>At5g43900.1 68418.m05368 myosin heavy chain (MYA2) nearly identical
to PIR|S51824 myosin heavy chain MYA2 [Arabidopsis
thaliana]
Length = 1505
Score = 37.1 bits (82), Expect = 0.25
Identities = 25/95 (26%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 3229 PVVDNVLEKNIKVESGRTFVMLGSTEVDY-DPNFRMYLTTKLANPQFNPAAYAKAVVINY 3287
PVVD L I E+ + M+ S E+ + ++ TTK++ + N A A++ ++
Sbjct: 964 PVVDQELMDKITNENEKLKSMVSSLEMKIGETEKKLQETTKISQDRLNQALEAESKLVKL 1023
Query: 3288 TVTVQGLEDQLLSVVVRAERSDLEEQRESLIIETS 3322
+Q LE+++L + AE+ + +Q S + T+
Sbjct: 1024 KTAMQRLEEKILD--MEAEKKIMHQQTISTPVRTN 1056
>At3g57060.1 68416.m06353 non-SMC condensin subunit, XCAP-D2/Cnd1
family protein similar to 13S condensin XCAP-D2 subunit
[Xenopus laevis] GI:3764087; contains Pfam profile
PF04594: Non-SMC condensin subunit, XCAP-D2/Cnd1
Length = 1439
Score = 36.7 bits (81), Expect = 0.34
Identities = 73/301 (24%), Positives = 130/301 (43%), Gaps = 32/301 (10%)
Query: 3297 QLLSVVVRAERSDLEEQRESLIIETSANK--SLLSGLEDSLLRELATSTGNMLDNVELV- 3353
QLL VV S++ +L + A + +LL +++ L ++ ++ N LV
Sbjct: 969 QLLFTVVENAPSEVVRSNCTLSLGDLAVRFPNLLEPWTENMYARLRDASVSVRKNAVLVL 1028
Query: 3354 -NTLENTKSKAAEVMEKLELAEATTKDIEKLRD----GYRPVAKRGSI-LFFVLSDMAGV 3407
+ + N K + E+A D+E++ + ++K+GS ++ +L D+ G
Sbjct: 1029 SHLILNDMMKVKGYI--YEMAICIEDDVERISSLAKLFFHELSKKGSNPIYNLLPDILGQ 1086
Query: 3408 NSMYQYSLSSYLDVFSF---SLRKAMPNVILVKRLKN----IIDMLTKNVYDYGCTGIFE 3460
S S+ +V F S++K LV++L N + ML +Y Y C G +
Sbjct: 1087 LSNRNLERESFCNVMQFLIGSIKKDKQMEALVEKLCNRFSGVTGMLVLMIYPYTCFGFNK 1146
Query: 3461 RHKLLFSFQMDIKLEQSE-DNVSQAQLDFFIKGNVSLEKSARS---SPAPWMPAQGWQDI 3516
++ L S +Q E + S + L F KG L +S +S + A + + ++ I
Sbjct: 1147 KYIPLTSTPKLADGKQWEYISYSLSLLTFTEKGIKKLIESFKSYEHALAEDLVTENFRSI 1206
Query: 3517 MKLSSDFPDP-----FATLPDDITKFLEEWQEWFDSDTPESAEIPNNYREKLKPFELLML 3571
+ F P + I KF E +E +T +AE+ +REK K E L +
Sbjct: 1207 INKGKKFAKPELKACIEEFEEKINKFHMEKKE--QEETARNAEV---HREKTKTMESLAV 1261
Query: 3572 L 3572
L
Sbjct: 1262 L 1262
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 36.3 bits (80), Expect = 0.44
Identities = 40/184 (21%), Positives = 78/184 (42%), Gaps = 10/184 (5%)
Query: 824 INVTDEDLQFAKSLEASWGSLYQTSLFRGNTL----EQTKEKFSKLNVVEISNFLKELDD 879
I EDL K + Y LF N L +++ E++S+ E+ +K L+
Sbjct: 254 IGSLQEDLSSCKDAATTTEEQYTAELFTANKLVDLYKESSEEWSR-KAGELEGVIKALEA 312
Query: 880 FVEKFDNEGPATVEDDMDRGLLLMEEYGKYIDELESRKKMLQAAEQLFDNPLADFSNFNR 939
+ + ++ ++ ++ LL +E G +LE + ++ + + L FSNF R
Sbjct: 313 RLSQVESSYKERLDKEVSTKQLLEKENGDLKQKLEKCEAEIEKTRKTDELNLIPFSNFTR 372
Query: 940 TKADYSAMDQIYKIYKAQKNAREVWAKTLWVNLNPQALVDG--IEQFFKEYRKLPKIVRL 997
+ D S + I ++Q +V A L L DG + + +++Y++ +R
Sbjct: 373 -RVDNSGTSNM--IEESQAVISKVPAGVSGTALAASLLRDGWSLAKIYEKYQEAVDAMRH 429
Query: 998 SSTG 1001
G
Sbjct: 430 EQLG 433
>At4g05060.1 68417.m00746 vesicle-associated membrane family protein
/ VAMP family protein similar to VAP27 GI:6688926
[Nicotiana plumbaginifolia]
Length = 287
Score = 34.7 bits (76), Expect = 1.4
Identities = 32/120 (26%), Positives = 62/120 (51%), Gaps = 9/120 (7%)
Query: 212 IMKFQKVSELNECEQKKEAFLQYKAFSKIIKEYEDTKYKEWVQDASLFCDNMMKKNILKV 271
+ KF + E NE ++++ +++K S +K T Y + + D++ ++ +++V
Sbjct: 163 VFKFVEPPENNEKPMEQKSGVKFKIMS--LKMKVPTDYMPELFEEQK--DHVSEEQVMRV 218
Query: 272 VFKKEDDP--VPQKARGMQLTAAGRAHVAKKKASNTSLKPLDIVNKEIAD--KRRRDKAL 327
VF ++P + +K + QL A A A+KKAS + P I + D K+RR++ L
Sbjct: 219 VFLDPENPNSMMEKLKS-QLAEADAADEARKKASEGIVGPKPIGEGLVIDEWKQRRERYL 277
>At2g29890.1 68415.m03630 villin 1 (VLN1) nearly identical to villin
1 (VLN1) [Arabidopsis thaliana] GI:3415113
Length = 909
Score = 34.7 bits (76), Expect = 1.4
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 87 TVDFSVFVFDNKENWDVIMGDFWNEVRYLED-EAKNYI-NQSFGNLRSSEEALTVLLKFL 144
T S V KE ++ + D E +L D +++ Y+ S N++S EEALT+ LKFL
Sbjct: 623 TCSCSSDVLKVKEIYNFVQDDLTTEDVFLLDCQSEVYVWIGSNSNIKSKEEALTLGLKFL 682
Query: 145 EFDTRE 150
E D E
Sbjct: 683 EMDILE 688
>At5g43740.2 68418.m05348 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 862
Score = 33.9 bits (74), Expect = 2.4
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 3012 NYLASLNREIDRLQKTLDGLNNRYETAMMRRQELQEETDLMMRRLVAADKLMSGLSSEQK 3071
NY+ + +D LQKT++ L N + ++ R ++E+ L +RL + +S + +
Sbjct: 25 NYIHMMESNLDALQKTMEELKNGRDD-LLGRVSIEEDKGL--QRLAQVNGWLSRVQIVES 81
Query: 3072 RWTEDLAALYVEQSR--LIGNC 3091
+ + L A+ +E R L+G C
Sbjct: 82 EFKDLLEAMSIETGRLCLLGYC 103
>At5g43740.1 68418.m05347 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 862
Score = 33.9 bits (74), Expect = 2.4
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 3012 NYLASLNREIDRLQKTLDGLNNRYETAMMRRQELQEETDLMMRRLVAADKLMSGLSSEQK 3071
NY+ + +D LQKT++ L N + ++ R ++E+ L +RL + +S + +
Sbjct: 25 NYIHMMESNLDALQKTMEELKNGRDD-LLGRVSIEEDKGL--QRLAQVNGWLSRVQIVES 81
Query: 3072 RWTEDLAALYVEQSR--LIGNC 3091
+ + L A+ +E R L+G C
Sbjct: 82 EFKDLLEAMSIETGRLCLLGYC 103
>At5g43730.1 68418.m05346 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 848
Score = 33.1 bits (72), Expect = 4.1
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 3012 NYLASLNREIDRLQKTLDGLNNRYETAMMRRQELQEETDLMMRRLVAADKLMSGLSSEQK 3071
NY+ + +D LQKT++ L N + + R + E D ++RL + +S + +
Sbjct: 26 NYIHLMESNLDALQKTMEELKNGRDDLLAR---VSIEEDKGLQRLALVNGWLSRVQIVES 82
Query: 3072 RWTEDLAALYVEQSRL 3087
+ + L A+ +E RL
Sbjct: 83 EFKDLLEAMSIETGRL 98
>At1g17140.2 68414.m02089 tropomyosin-related similar to Tropomyosin
1. [Baker's yeast](SP:P17536) {Saccharomyces cerevisiae}
Length = 344
Score = 33.1 bits (72), Expect = 4.1
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 3302 VVRAERSDLEEQRESLIIETSANKSLLSGLEDSLLRELATSTGNMLDNVELV-NTLENTK 3360
+++A D+E++ ESL E + K+ LS S + + + M+ V + LE ++
Sbjct: 174 MLKARLYDMEKEHESLGKENESLKNQLSD-SASEISNVKANEDEMVSKVSRIGEELEESR 232
Query: 3361 SKAAEVMEKLELAEATTKDIE 3381
+K A + EKLE E +E
Sbjct: 233 AKTAHLKEKLESMEEAKDALE 253
>At1g17140.1 68414.m02088 tropomyosin-related similar to Tropomyosin
1. [Baker's yeast](SP:P17536) {Saccharomyces cerevisiae}
Length = 344
Score = 33.1 bits (72), Expect = 4.1
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 3302 VVRAERSDLEEQRESLIIETSANKSLLSGLEDSLLRELATSTGNMLDNVELV-NTLENTK 3360
+++A D+E++ ESL E + K+ LS S + + + M+ V + LE ++
Sbjct: 174 MLKARLYDMEKEHESLGKENESLKNQLSD-SASEISNVKANEDEMVSKVSRIGEELEESR 232
Query: 3361 SKAAEVMEKLELAEATTKDIE 3381
+K A + EKLE E +E
Sbjct: 233 AKTAHLKEKLESMEEAKDALE 253
>At4g22940.1 68417.m03312 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 458
Score = 32.7 bits (71), Expect = 5.5
Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 515 KNYKDPETGIPDDTWIYPCKTYFVEVENERLERVAGLSRIYDRIGPILMKLE--YLILGT 572
+N TG+P++ + + N++ ++V L ++ D++GP +K E L++
Sbjct: 9 RNKPAAPTGLPENRPRFHTLPSERRIANDQAQKVTELLKMSDKLGPKELKREESILVVNV 68
Query: 573 SSGRSEVMASYYAYWEKKIF-KCLVNFTLENLEHFQQ 608
SE+ AS + W + + LV +T HF++
Sbjct: 69 HPRSSELAASGWPPWLISVAGEALVGWTPGRESHFEK 105
>At3g55310.1 68416.m06143 short-chain dehydrogenase/reductase (SDR)
family protein contains similarity to
3-oxoacyl-[acyl-carrier protein] reductase SP:P51831 from
[Bacillus subtilis]
Length = 298
Score = 32.7 bits (71), Expect = 5.5
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 3102 GPFSFSFRQTMIYEDWLGDVMERGIPLTLPFTIERNLTNEV 3142
G F Q ++ ++WL +V ER +PL + TI+ LT+ V
Sbjct: 225 GLFKSEITQALMQKEWLKNVTERTVPLKVQQTIDPGLTSLV 265
>At3g25970.1 68416.m03236 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 646
Score = 32.7 bits (71), Expect = 5.5
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 1060 HKYQDVAEEIVNHAIKELAIERGVKDVQE-TWANISFSVSRHFNRGEDRGYTLNPCDDIV 1118
H Y D+ + ++K++ ERGVK V +W I V + FN EDR L C DI
Sbjct: 565 HMYSDLKKWEEKASVKKMMKERGVKKVPGWSWIEIRNQV-KAFN-AEDRSNPL--CQDIY 620
Query: 1119 VKLDDDSMSLQ 1129
+ + D + +Q
Sbjct: 621 MMIKDLTQEMQ 631
>At1g63440.1 68414.m07174 copper-exporting ATPase, putative /
responsive-to-antagonist 1, putative /
copper-transporting ATPase, putative similar to ATP
dependent copper transporter SP|Q9S7J8 [Arabidopsis
thaliana]
Length = 995
Score = 32.7 bits (71), Expect = 5.5
Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 1640 SKVGIFITMNPGYAGRTELPESVKALFRPVVCILPDLEMICQISLFSDGFLTAKVLAKKM 1699
++ GI +++N G + + +K R + IL + I I + D + TA +A+++
Sbjct: 775 AQTGILVSINSELIGVLSVSDPLKPSAREAISILKSMN-IKSIMVTGDNWGTANSIAREV 833
Query: 1700 TVLYKVAREQLSKQSHYDWGLRALTAVLRMAGKLRRDSPGL 1740
+ +A + +++ L+A V+ M G DSP L
Sbjct: 834 GIDSVIAEAKPEQKAEKVKELQAAGHVVAMVGDGINDSPAL 874
>At4g15790.1 68417.m02403 expressed protein
Length = 191
Score = 32.3 bits (70), Expect = 7.2
Identities = 22/74 (29%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
Query: 761 LNTHVK-FVDVGASLRMTINMNIKGL-EDFKLVMATITQVQQMTITAEVKYRGMQEIFHM 818
L+T VK + + + L+ T+N+ ++ L E+FK + T+ Q QQ ++A +K G+Q+
Sbjct: 107 LDTQVKVYREELSGLKKTLNLEVEQLREEFKDLKTTLNQ-QQDDVSASLKSLGLQDSKEQ 165
Query: 819 LKQHGINVTDEDLQ 832
+ + VT+E ++
Sbjct: 166 IDKRS-EVTEEKVE 178
>At5g48600.1 68418.m06011 structural maintenance of chromosomes
(SMC) family protein similar to SP|P50532 Chromosome
assembly protein XCAP-C {Xenopus laevis}; contains Pfam
profiles PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1241
Score = 31.9 bits (69), Expect = 9.5
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 10/122 (8%)
Query: 449 DMERHILPGLTRITW----TALGINDYIKDITKGENSLQAVYQQLKMVEKEIQFLINQLQ 504
+ E ++L L+ + W T + D + IT+ +SLQ + LK ++ +L+
Sbjct: 246 EAETYMLKELSHLKWQEKATKMAYEDTVAKITEQRDSLQNLENSLKDERVKMDESNEELK 305
Query: 505 EFDLFPVVRPKNYKDPETGIPDDTWIYPCKTYFVEVENERLERVAGLSRIYDRIGPILMK 564
+F+ V K+ K E D + CK F E E + ++ L + +I + K
Sbjct: 306 KFES---VHEKHKKRQEVL---DNELRACKEKFKEFERQDVKHREDLKHVKQKIKKLEDK 359
Query: 565 LE 566
LE
Sbjct: 360 LE 361
>At3g16620.1 68416.m02124 chloroplast outer membrane protein, putative
similar to chloroplast protein import component Toc159
[Pisum sativum] GI:8489806, chloroplast outer envelope
protein 86 [Pisum sativum] GI:599958, GTP-binding protein
[Pisum sativum] GI:576509
Length = 1089
Score = 31.9 bits (69), Expect = 9.5
Identities = 21/76 (27%), Positives = 32/76 (42%)
Query: 3185 IKKKEAKNNLKVLSFNDPQFLRQLEMAIKYGMPVLFQDVNEYIDPVVDNVLEKNIKVESG 3244
I KEA ++L L ND + I YG DV E + N+ +++ +E+G
Sbjct: 108 ITTKEADSDLVTLKMNDYDHGEVADADISYGKMASSLDVVENSEKATSNLATEDVNLENG 167
Query: 3245 RTFVMLGSTEVDYDPN 3260
T + V D N
Sbjct: 168 NTHSSSENGVVSPDEN 183
>At1g77620.1 68414.m09037 expressed protein
Length = 1151
Score = 31.9 bits (69), Expect = 9.5
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 1820 RHCTMLVGPTGGGKTVILHCLVKAQ------TNLGLPTKLTVVNPKACSVIELYGI---L 1870
++ ++VGP G GK+ +H K Q +N TVV K ++ Y + L
Sbjct: 385 KNVLLIVGPAGSGKSAAIHACAKEQGFKILESNTSECRSGTVVRQKFGEALKSYSLSRSL 444
Query: 1871 DPVTRDWTDG 1880
DP+ TDG
Sbjct: 445 DPLFNSCTDG 454
>At1g12150.1 68414.m01407 expressed protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827);
expression supported by MPSS
Length = 548
Score = 31.9 bits (69), Expect = 9.5
Identities = 14/62 (22%), Positives = 33/62 (53%)
Query: 3014 LASLNREIDRLQKTLDGLNNRYETAMMRRQELQEETDLMMRRLVAADKLMSGLSSEQKRW 3073
LA++ E++ + K +N+ E + +E+++ T+L + +A+ + SE +RW
Sbjct: 480 LATIAAELEEINKRRAEADNKLEANLKAIEEMKQATELAQKSAESAEAAKRMVESELQRW 539
Query: 3074 TE 3075
+
Sbjct: 540 RQ 541
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.321 0.137 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,469,021
Number of Sequences: 28952
Number of extensions: 3975843
Number of successful extensions: 10172
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 10157
Number of HSP's gapped (non-prelim): 35
length of query: 4153
length of database: 12,070,560
effective HSP length: 96
effective length of query: 4057
effective length of database: 9,291,168
effective search space: 37694268576
effective search space used: 37694268576
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 69 (31.9 bits)
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