GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001859-TA|BGIBMGA001859-PA|IPR003593|AAA ATPase,
IPR013594|Dynein heavy chain, N-terminal region 1, IPR013602|Dynein
heavy chain, N-terminal region 2, IPR011704|ATPase associated with
various cellular activities, AAA-5, IPR004273|Dynein heavy chain
         (4153 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    29   0.89 
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    28   1.5  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    28   1.5  
AF265300-1|AAG17643.1|  126|Tribolium castaneum putative cytochr...    26   4.7  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       25   8.3  

>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
            monooxygenase protein.
          Length = 463

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 3/96 (3%)

Query: 977  LVDGIEQFFKEYRKLPKIVRLSSTGLMLD--LKMKQFKGVVPLMVSLKNEAMRERHWKEL 1034
            LV  I +FF EYR LP+ V     GL+LD   K +  K V P ++ L  EA + +   + 
Sbjct: 181  LVPKIAEFF-EYRVLPRKVTDFFEGLILDNMQKREAEKIVRPDLIHLLMEARKGKLKHDN 239

Query: 1035 MAKTGQDFDMSPDRFTLENMFAMELHKYQDVAEEIV 1070
              + G+ F    +    +N   +EL   + VA+ ++
Sbjct: 240  SNEGGEGFATVEESEIGKNTKQVELTDEKIVAQALL 275


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 20/68 (29%), Positives = 40/68 (58%), Gaps = 6/68 (8%)

Query: 362 LTVHKLIQEYNLEFQPNFDKDLFLVIHEA-EL-MEQLGFDVPS--NVRDVAMQKSRLFYE 417
           L   +L+ E N   QP  D+ LF+V H+A EL  +Q+ +++ S  N+    +++S+    
Sbjct: 34  LEAQRLLSEQNN--QPVHDEHLFIVTHQAYELWFKQIIYELDSIRNIFSDVLEESQTLEI 91

Query: 418 LEALSKII 425
           L+ L++++
Sbjct: 92  LKRLNRVV 99


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 20/68 (29%), Positives = 40/68 (58%), Gaps = 6/68 (8%)

Query: 362 LTVHKLIQEYNLEFQPNFDKDLFLVIHEA-EL-MEQLGFDVPS--NVRDVAMQKSRLFYE 417
           L   +L+ E N   QP  D+ LF+V H+A EL  +Q+ +++ S  N+    +++S+    
Sbjct: 34  LEAQRLLSEQNN--QPVHDEHLFIVTHQAYELWFKQIIYELDSIRNIFSDVLEESQTLEI 91

Query: 418 LEALSKII 425
           L+ L++++
Sbjct: 92  LKRLNRVV 99


>AF265300-1|AAG17643.1|  126|Tribolium castaneum putative cytochrome
            P450 monooxigenase protein.
          Length = 126

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 23/94 (24%), Positives = 48/94 (51%), Gaps = 12/94 (12%)

Query: 3165 TTRASRFPLCI---DPQTQALTWIKKKEA-KNNLKVLSFNDPQFLRQLEMAIKYGMPVLF 3220
            T  AS F +CI    P+ Q   + + ++  +++ + ++FND   ++ LE        VL 
Sbjct: 1    TAAASSFFICILGVYPEIQEKVYQELRDIFQDSDRPITFNDTLQMKYLER-------VLL 53

Query: 3221 QDVNEYID-PVVDNVLEKNIKVESGRTFVMLGST 3253
            + +  Y   P++  V+ + +K+ SG   + +G+T
Sbjct: 54   ETLRMYPPVPIITRVINEEVKLASGDYTLPVGTT 87


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 7/47 (14%)

Query: 3884 NIAVDVLSKLPT----LYEIWR---VRKQFEMNITPTLVVLLQELER 3923
            N+  D+LS+ P+     YE  R   +   FE+N TP ++ L+ +L++
Sbjct: 24   NVVADILSRYPSDGEASYEYPREQPIVAMFEVNNTPEILQLMSDLKQ 70


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.137    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 917,570
Number of Sequences: 317
Number of extensions: 39265
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 100
Number of HSP's gapped (non-prelim): 5
length of query: 4153
length of database: 114,650
effective HSP length: 71
effective length of query: 4082
effective length of database: 92,143
effective search space: 376127726
effective search space used: 376127726
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)