Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001859-TA|BGIBMGA001859-PA|IPR003593|AAA ATPase,
IPR013594|Dynein heavy chain, N-terminal region 1, IPR013602|Dynein
heavy chain, N-terminal region 2, IPR011704|ATPase associated with
various cellular activities, AAA-5, IPR004273|Dynein heavy chain
(4153 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 300 3e-81
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 37 0.069
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 36 0.16
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 34 0.37
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 31 2.6
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha... 31 2.6
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 31 2.6
SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces pomb... 31 3.5
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp... 31 3.5
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 31 4.6
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom... 30 6.0
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 30 8.0
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S... 30 8.0
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 300 bits (736), Expect = 3e-81
Identities = 245/974 (25%), Positives = 442/974 (45%), Gaps = 66/974 (6%)
Query: 1008 MKQFKGVVPLMVSLKNEAMRERHWKELMAKTGQDFDMSPDRFTLENMFAMELHKYQDVAE 1067
+ Q K L+ LK+ ++ HW L T + ++ + ++ ++L ++
Sbjct: 1386 LNQLKDCTLLLQKLKSCPLKPVHWISLFEITKSTEQLDFEKLLVSDILGIDLQAHESFIT 1445
Query: 1068 EIVNHAIKELAIERGVKDVQETWANISFSVSRHFNRGEDRGYTLNPCDDIVVKLDDDSMS 1127
++N A+ E +E +V W N FS F + R Y + C +++ ++ + S
Sbjct: 1446 TLLNSAVVEANLENQFNEVHSFWKNSYFS----FKSFKGRNYIVVGCQELIDAVEKNMDS 1501
Query: 1128 LQSMAASQFIGPFLTVVQTWEHRLSLISEIIEEWMATQRKWLYLEGIFVGGD-IRTQLPE 1186
L + S+ + + ++ +I + + W Q+ W +L IF I+ LPE
Sbjct: 1502 LNLIKTSRHFKDGDMNITDLQSKMKIIVKFLNIWKEIQQIWTHLSAIFYESTYIQQLLPE 1561
Query: 1187 EAKKFDDIDRAFRKIMLDTAKRLNVVDCCTIGGRLEEFVNLGLGLQSSKIIRSASSDVTR 1246
A F + + + ++ +R + I LE L L+ SK ++ R
Sbjct: 1562 LAASFFNSSKTYMHLVTLLKERSYLYKVSNIPSLLESAAKLSTTLEDSKKSLLKYFELQR 1621
Query: 1247 KQINLSQAIAWADRASLSLVPRSHLHAKAQAKRDTFSCVQPMFDNIRALDLYVDHTNRPV 1306
+I+ + D L P Q + ++ IR+L + ++TN
Sbjct: 1622 HKISRLYFLGDDDLMELISNPCDPFVINKQ--------IIKLYPGIRSLIVDTENTN--- 1670
Query: 1307 AAKMISAEGEIMDFRNVVYTEGRVED--WMNLVLVEMRHT--NKFITK-KAI--FYYGKN 1359
+ EG + F N + + W++ + ++ T F T + I FYY K+
Sbjct: 1671 INGCTTNEGNELLFDNPICLLDNTQPLHWISSLEPFLKATLFQLFSTSFQQIRDFYYNKS 1730
Query: 1360 WKVPRTDWILEYQGMVCLAANGVWWTAETEETFLRIKKGNKRAMKEHLQQQNEQLDGLVV 1419
V +W L Y + L + E E + N+ + LV+
Sbjct: 1731 RNVFCKEWFLRYPSQITLLSLRCTLCHEIETGIADC------CLDAVFNFINDGISSLVL 1784
Query: 1420 KVRQDLSSNDRLKFRTITTIDVHARDIIEGFVRDNITEAAEFEWESQLR-FYWLKKDDN- 1477
++ S + K + +H ++ + +++ + W +++ FY DD
Sbjct: 1785 LADENELSIKK-KVTLMFNELLHFKETVGLLCKNSFNN---YFWSREVKAFYREDHDDEA 1840
Query: 1478 LWIRQCTGVFEYGYEYMGLNGRLVITPLTDRIYLTITQALTMQLXXXXXXXXXXXXXXXX 1537
+ I+ + F Y +EY L+ +V T LT + + ++ L
Sbjct: 1841 VVIKMFSLEFIYAFEYSELDDPIVYTDLTRNCFSVLLHSIASNLGGSPIGPAGTGKTETV 1900
Query: 1538 XDLAKALGLLCVVTNCGEGMDFRAVGQILAGLCQCGAWGCFDEFNRIDISVLSVISTQLQ 1597
++ LG V NC +++ + +IL+GL Q G + CFDEFNR+D LS IS +Q
Sbjct: 1901 KAVSAYLGKNVFVFNCDNAFNYKTIQRILSGLAQIGTYICFDEFNRLDSGTLSAISYDIQ 1960
Query: 1598 CIRSALLMKLKRFTVNTDVLKPSQKFGRLKTKRRAGQEIAMDSKVGIFITMNPGYAGRTE 1657
I+S + ++D L S I +D+ IF+TMNPGY GR +
Sbjct: 1961 RIQSLVS--------HSDGLCQSP--------------ILLDAPT-IFVTMNPGYLGRFK 1997
Query: 1658 LPESVKALFRPVVCILPDLEMICQISLFSDGFLTAKVLAKKMTVLYKVAREQLSKQSHYD 1717
LP ++K LFRP+ PD + IC+I S GF + +L++ + + LS HYD
Sbjct: 1998 LPSNLKKLFRPIWMGSPDNKKICEILFLSFGFKESSLLSQVLDSFFLCCSGSLSNCLHYD 2057
Query: 1718 WGLRALTAVL----RMAGKLRRDSPGLSEIMVLMRALRDMNHPKFVFEDVPLFLGLIKDL 1773
+GLRA+ V+ R+ G L++ + E+ +L A+R++ +P +++D+PLF +
Sbjct: 2058 FGLRAMKVVIKAAKRIKGFLKKKNTICQELEILWYAIREVLYPSLIYQDIPLFFKAEESY 2117
Query: 1774 --FPGLECPRVGYPE-FNAAVLEVLEKDGYVVLPHQVDKVVQLYETMMTRHCTMLVGPTG 1830
FP ++ P+ F + + L K+ + + K++QLY+ + +L+G TG
Sbjct: 2118 FNFPAVKANAFIDPDNFEVNIEQTLSKNFFGNNQYLKLKIMQLYQMSEAYNGIILLGKTG 2177
Query: 1831 GGKTVILHCLVKAQTNLGLPTKLTVVNPKACSVIELYGILDPVTRDWTDGLYSKIFREMN 1890
GK+ I L A N+G+ + V++PKA + L+G ++ TR+WTDG+++K+ R+
Sbjct: 2178 SGKSQIFRILQSALLNIGIDCIVYVISPKALTKESLFGSMNMDTREWTDGVFTKLLRK-T 2236
Query: 1891 RPAEKNERRYSLFDGDVDALWIENMNSVMDDNKLLTLANGERIRLAPYCSLLFEVGDLNY 1950
R + +R +FD ++ W+E MNS++DDNK LTL+NGERI L PY + FE +
Sbjct: 2237 RDSCYYKRYMFVFDDELSPEWVEAMNSLLDDNKTLTLSNGERIALQPYVKIFFEADSVAS 2296
Query: 1951 ASPATVSRAGMVFV 1964
+ AT+SR G++ +
Sbjct: 2297 LTRATISRCGLICI 2310
Score = 133 bits (322), Expect = 4e-31
Identities = 147/802 (18%), Positives = 313/802 (39%), Gaps = 34/802 (4%)
Query: 2688 PGLVNNTTIDWQFPWPKQALLAVANVFLADVQKIP--------------EEFRPIIVEHV 2733
P L+N TID+ W ++L +AN L + + + + V
Sbjct: 3006 PALLNRCTIDYYHSWDYHSMLQIANEVLQETISLNALDHDNPNLKNIKGSSIYDAVAQAV 3065
Query: 2734 VHVHMSVARYSAEFLLRLRRNNYVTPKHYMDFLTNYLALLNEKDAFIVAQCERLKGGLAK 2793
V+ H S+ EF L + +Y + H++ FL + + + + R++ G K
Sbjct: 3066 VNTHTSIVW---EFK-HLGKTSYFSCLHFIRFLNTFCLIFGRDANKLSKEKSRIENGFKK 3121
Query: 2794 IAEANVQLEDLNAKLAVQKVIVAEQTKECEILLKEISTATEXXXXXXXXXXXXXXEITEQ 2853
I E + ++ L+ Q+ ++ +TK L+ I + + ++
Sbjct: 3122 IKETSQGIDKFKEALSDQQNVLFSKTKTANDRLQCIIQTKQAVEAKKVYSLQAEASLQKK 3181
Query: 2854 SKVIAVEKXXXXXXXXXXXXXXXXXXXXXXXXXKNDITEIRSFATPPEAVQVVCECVVII 2913
S ++ +K K + E+RS + PP A+++ E V +
Sbjct: 3182 SFLLNEKKNSVMKEVSYAKPAVIEARKSVSDIKKAHLIELRSLSRPPMAIRITMEVVCKL 3241
Query: 2914 RGIKDVSWKGAKGMMADPNFLRNLQEMNCD--LITQAQVKAVKTHMKKSK-KLDTMQQIS 2970
G WK + ++ +F+ + N + L + K + + D++ + S
Sbjct: 3242 LGFSATDWKNVQQLLKRDDFIPKILNYNLEKELSINLRRKIEQDYFSNPIFTFDSVNRAS 3301
Query: 2971 KAGYGLLKFVTAVLGYCAXXXXXXXXXXXXXXXXXXYSEAVNYLASLNREIDRLQKTLDG 3030
KA LL ++ ++ Y A + L + L
Sbjct: 3302 KACGPLLLWIKSICNYSKVLEKLEPLNSEVDRLKLEQKNAEECIQETIAACKDLDEKLLQ 3361
Query: 3031 LNNRYETAMMRRQELQEETDLMMRRLVAADKLMSGLSSEQKRWTEDLAALYVEQSRLIGN 3090
L Y + + ++ + D + ++ + ++++ LS E+ W+ L L+G
Sbjct: 3362 LQEEYASMISEIHSMELQMDEVKCKMQRSIEVITDLSIERNEWSGFLNLYPKRMWNLVGE 3421
Query: 3091 CLLATSFLSYTGPFSFSFRQTMIYEDWLGDVMERGIPLTLPFTIERNLTNEVEVSGWNSE 3150
L+ SF+ Y G S R + + G P++ + N+ V+ S +
Sbjct: 3422 SLMEASFVVYAGNLDPSMR-IFLRNKCEPIISSFGFPISKS-AVRTNIERCVQTSIESKY 3479
Query: 3151 GLPPDELSVQNGILTTRASRFPLCI-DPQTQALTWIKKKEAKNNLKVLSFNDPQFLRQLE 3209
+ S++N I + ++ PL I DP +Q L + ++SF++ F Q++
Sbjct: 3480 YKNLTDYSLEN-IYIIQENKSPLLIIDPSSQILDILPSLYKGKASDLISFSNKSFQNQIK 3538
Query: 3210 MAIKYGMPVLFQDVNEYIDPVVDNVLEKNIKVESGRTFVMLGSTEVDYDPNFRMYLTTKL 3269
+A+ G ++ +D E D ++ +L+ SG + + +++
Sbjct: 3539 LALLSGSAIIIKDA-ELWDVSIEPLLKPEFFTGSGEVQTTFAKDTITITLPLNIIFFSEV 3597
Query: 3270 ANPQFNPAAYAKAVVINYTVTVQGLEDQLLSVVVRAERSDLEEQRESLIIETSANKSLLS 3329
+ + A V+N+T+++ LE Q+L V+ + + +Q+++ + + +
Sbjct: 3598 QSNELENKASKFMNVVNFTLSISLLETQMLKSVISVQEPGVFKQKDNCFTLKLSIERQIR 3657
Query: 3330 GLEDSLLRELATSTGNMLDNVELVNTLENTKSKAAEVMEKLELAEATTKDIEKLRDGYRP 3389
L++ LL+ L +S N++ E+V L+N K K + +++ + +++L Y+
Sbjct: 3658 SLQEQLLKTLCSSNENIVGTDEIVVLLKNLKEKHETIRLAYSESQSINRKVDELIRRYKL 3717
Query: 3390 VAKRGSILFFVLSDMAGVNSMYQYSLSSYLDVFSFSLRKAMPNVILVKR---LKNIIDML 3446
K + V + Y +S + F +S M NV+L R K++I
Sbjct: 3718 SIKSFLSVVVVFQHFISLKKSYSFSFN-----FIWSTFHQMLNVVLENRNQDFKSLIMDA 3772
Query: 3447 TKNVYDYGCTGIFERHKLLFSF 3468
+++ IF ++LF F
Sbjct: 3773 LRDLIRRCFLYIFPEDRVLFLF 3794
Score = 51.6 bits (118), Expect = 2e-06
Identities = 40/167 (23%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 2251 IALLKLLFERKGFYDRGKDLNWKNLKDIGFLAAMGKAGG-GRNDVDPRFISMFSVYNLQF 2309
I L+ + E +GF+ W +K+I A + GRND RF+ + + +
Sbjct: 2605 ICFLRHMLEHQGFW-HPLHKEWVTIKNIFVCGACNPSTDIGRNDFPERFLRRTVLIFVDY 2663
Query: 2310 PSENTLRHIYVSILKGHFEIFPEEIQGIVEKIVQMTLDLYKIIIVELPPTPAKFHYIFNL 2369
P +L IY ++L+ I + + I+ IV+ ++ Y+++ + Y++
Sbjct: 2664 PESYSLVTIYNALLEKSALI--NQYKTIILNIVKASVKFYQVLRENFKSSTQG--YVYTP 2719
Query: 2370 RDLSRIAAGMCLTHANYFSEKR--TVVRCWRNEFTRVICDRLINQQD 2414
RDL+R +A ++E ++++ W +E RV+ DRL++Q++
Sbjct: 2720 RDLTRWLISF-KNYAESYAETNNLSLIKVWYHEACRVLLDRLVSQKE 2765
Score = 50.4 bits (115), Expect = 5e-06
Identities = 26/144 (18%), Positives = 61/144 (42%)
Query: 2519 DLLDYEAIYFLFQEILDEYNERNAKMSIVLFEDCLEHLTRTHRILRMDRGNAMXXXXXXX 2578
+ LD+ ++ + + ++ + ++V ++ + H+ R HRIL +A+
Sbjct: 2805 EFLDFASLRPKLESLYKKFYSSHPNNTLVFVDETITHILRFHRILNNSGMHALLQGSVGL 2864
Query: 2579 XXXXXCKLAAFAAGCEMFEITVTRNYNENTFKDDMKRMYLQLGVDNKKTVFLFTAAQILE 2638
+ + +FE+ + Y+ F+D++K + + G N K +
Sbjct: 2865 GQKAVVEFVCWLNSFSLFELQKNQTYSIEDFEDNLKSILILAGTTNCKACLAINESIAGV 2924
Query: 2639 EGFLEFINNILMIGMIPALFGDDE 2662
GFL+ +NN+L + F ++
Sbjct: 2925 PGFLDLLNNLLTNSEVSNFFDQND 2948
Score = 46.0 bits (104), Expect = 1e-04
Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Query: 101 WDVIMGDFWNEVRYLEDEAKNYINQSFGNLRSSEEALTVLLKFLEFDTRESIRRQLSTKF 160
W+ + ++N + LEDE + ++S + T L++F R +R +S
Sbjct: 536 WNSLETSYYNCMTVLEDEVIAQLKSLLQYSKTSSQMFTTLMRFQPLFFRTRVRTSISDCL 595
Query: 161 DLVMRQFIKEITAIEDKFTRYRKNPPL-----LRNHPPVAGAISWARALFNKMKQ 210
L++ + +E+ ++ +FT + L LRN P + AI WA L N++ +
Sbjct: 596 HLLVNRIKQELDLLKTRFTEDVSDTELIAMNELRNLPMASSAIIWATQLKNRLHE 650
Score = 33.5 bits (73), Expect = 0.65
Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 370 EYNLEFQPNFDKDLFLVIHEAELMEQLGFDVPSNVRDVAMQKSRLFYELEALSKIIAKYN 429
E L + D D E + LG+++PS + ++A R+ L + +N
Sbjct: 719 ESPLRLSVSIDFDPCSFCKEIRTLAHLGYNIPSQLMELASCLQRIQLIAMCLIDSVQSFN 778
Query: 430 KNASSLSPS--ETYLMKRHLLDMERHILPGLTRITW 463
+ +S + E +L++ + L + +HI+ GL I+W
Sbjct: 779 DVSFEISKTEEERFLLQEYELAVRQHIVTGLF-ISW 813
Score = 30.7 bits (66), Expect = 4.6
Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 8/128 (6%)
Query: 3648 LSLGQGQ-EGAALSLLEGAISHGQWLILQNCHLLVSFLRELEKQLELMTKPHPEYRLWLT 3706
+SLG + E A S L+ A + WL + N HL + +L ++ H R+
Sbjct: 3935 VSLGSAENESLADSYLKLASTEPLWLFINNIHLSTPWAEKLPSKMS--NHLHKNSRIVCL 3992
Query: 3707 TDPTPTFPIGIL--QRSLK-EPPNGLKLNLRNTYFKMRARALEECPHPQFKKLVYVLAFF 3763
++ P +L RS+ K NL N ++ PH +F +L + L++
Sbjct: 3993 SEIHNQLPHQLLCISRSIVFNKQTSFKNNLLN-LLELLPTMTHTLPHNRF-RLFFFLSWL 4050
Query: 3764 HAVVQVMY 3771
HA + +Y
Sbjct: 4051 HATLAEIY 4058
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 36.7 bits (81), Expect = 0.069
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Query: 3010 AVNYLASLNREI-DRLQKTLDGLNNRYETAMMRRQELQEETDLMMRRLVAADKLMSGLSS 3068
AV YL R + D L + ++ N + + Q++ + TD + +L L
Sbjct: 515 AVQYLQRRLRMVEDELHEAINSKNVQQSRSEELEQQISKLTDNLQEYRNTVRELKLDLEK 574
Query: 3069 EQKRWTEDLAALYVEQSRLIGNCLLATSFLSYTGPFSFSFRQTMIYEDWLGDVME 3123
+K+ EDL+ L VE+ I N + L+ F F + Q ED G ++E
Sbjct: 575 SKKK-NEDLSKLEVEKVEEIANLKKELTHLAKQQEFGFKYVQEFSNEDLQGKLIE 628
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 35.5 bits (78), Expect = 0.16
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 1823 TMLVGPTGGGKTVILHCLVKAQTNLGLP-TK--LTVVNPKACSVIELYGILDPVTRDWTD 1879
T++VG G GKT I+ CL A T + P TK + +PK C E+ + R+ T+
Sbjct: 30 TLIVGQNGSGKTTIIECLKYATTGILPPNTKGGAFIHDPKICGEKEVLAQVKLAFRN-TN 88
Query: 1880 GLYSKIFREMNRPAEKNERRYSLFDGDV 1907
+ R + +K R+ DG +
Sbjct: 89 QVKMICTRSLQLSVKKTTRQQKTLDGQL 116
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 34.3 bits (75), Expect = 0.37
Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 3009 EAVNYLASLNREIDRLQKTLDGLNNR---YETAMMRRQELQEETDLMMRRLVAADKLMSG 3065
E VNYL + +++ +L+K L+ LN++ Y+ + +EL+ + + + + K +
Sbjct: 1076 EKVNYLEADVKQLPKLKKELESLNDKDQLYQLQATKNKELEAKVKECLNNIKSLTKELEN 1135
Query: 3066 LSSEQKRWTEDLAALYVEQSRLIGNCLLATSFL 3098
E+ + D + Y+E + N LL S L
Sbjct: 1136 -KEEKCQNLSDASLKYIELQEIHENLLLKVSDL 1167
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 31.5 bits (68), Expect = 2.6
Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 16/154 (10%)
Query: 111 EVRYLEDEAKNYINQSFGNLRSSEEALTVLLKFLEFDTRESIRRQLSTKFDLVMRQFIKE 170
+VR DEA + I + N R S E L VL F+ FD+ ES + +F LV F
Sbjct: 374 DVRVSIDEALSIIIPYYSNFRFSNELLPVLEPFI-FDSPESPAAYCALRFVLVAFPF--- 429
Query: 171 ITAIEDKFTRYRKNPPLLRNHPPVAGAISWARALFNKMKQPIMKFQKVSELNEC-EQKKE 229
+ +F + P + +H I A+ N + +++ V NE E+ K
Sbjct: 430 -DYLPARFICLKVQNPFVFHH----SFIEEAKKGLNLSQW--VQYNSVYSTNEAQEEDKV 482
Query: 230 AFLQYKAFSKIIK---EYEDTKYKEWVQDASLFC 260
Y + S++I D K K W +A+ +C
Sbjct: 483 RAASYPSASEVISFILSDHDLK-KFWESNAAEYC 515
>SPCC1322.14c |vtc4||vacuolar transporter chaperone
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 31.5 bits (68), Expect = 2.6
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 3351 ELVNTLENTKSKAAEVMEKLELAEATTKDIEKLRDGYRPVAKRG-SILFFVLSD-MAGVN 3408
EL K+K+AEVME++ E T ++ + D P + +IL L+D MA V+
Sbjct: 53 ELDKVYSFQKNKSAEVMERIRFCEEQTDEVVRRLDSDNPPNENDFAILETELTDIMATVH 112
Query: 3409 SMYQYSLSSY 3418
+ ++S +Y
Sbjct: 113 DLAKFSELNY 122
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 31.5 bits (68), Expect = 2.6
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 3331 LEDSLLRELATSTGNMLDNVELVN--TLENTKSKAAEVMEKLELAEATTKDIEK 3382
+ DS R+++ S GN++D ++++N TLEN K E + ++K +EK
Sbjct: 549 VRDSEGRKMSKSLGNVIDPMDIINGVTLENMKKALLEGNLPISEVHKSSKQMEK 602
>SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 455
Score = 31.1 bits (67), Expect = 3.5
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 1872 PVTRDWTDGLYSKIFREMNRPAEKNERRYSLFDGDVDALWIENMNSVMDDNKLLTLANGE 1931
P +W G +S + R AE+ R F+ + + W N+ +++D NKL L+NG
Sbjct: 132 PKQSNWLGGFWSTASAAV-RSAEQRVRSIKGFEENAN--WDINVRNMVDLNKLGDLSNGI 188
Query: 1932 RIRLAPYCS 1940
R + P S
Sbjct: 189 RSKALPTLS 197
>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1210
Score = 31.1 bits (67), Expect = 3.5
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 402 SNVRDVAMQKSRLFYELEALSKIIAKYNKNASSLSPSETYLMKRHLL----DMERHILPG 457
S VRD+ ++ RLF + + + + + N +S E + K H+ D +R+ +
Sbjct: 600 SIVRDIREKELRLFTDAGRICRPLFIVDNNPNSERRGELCIRKEHIQQLIEDKDRYDIDP 659
Query: 458 LTRITWTAL---GINDYIKDITKGENSLQAVYQQLKMVEKEIQFLINQLQEFDLFPVVRP 514
R WTAL G+ +Y+ D + E + A+ + +++Q +E D V+P
Sbjct: 660 EQRFGWTALVSSGLIEYL-DAEEEETVMIAMSPEDLEASRQMQAGYEVKEELDPAQRVKP 718
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 30.7 bits (66), Expect = 4.6
Identities = 22/95 (23%), Positives = 44/95 (46%)
Query: 856 EQTKEKFSKLNVVEISNFLKELDDFVEKFDNEGPATVEDDMDRGLLLMEEYGKYIDELES 915
+ TKE+ S + ++SN K+ DF++ + + +E + ME + I LE+
Sbjct: 262 QNTKEQKSGSSQDDLSNQQKQQLDFMDSLNKKLSTELESIKEASRKEMETHCATIQTLEN 321
Query: 916 RKKMLQAAEQLFDNPLADFSNFNRTKADYSAMDQI 950
K + ++ FS+++ K + S + QI
Sbjct: 322 EVKEARKVKEESLTLANKFSDYDEIKRELSVLKQI 356
>SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 401
Score = 30.3 bits (65), Expect = 6.0
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 3325 KSLLSGLED-SLLRELATSTGNMLD-NVELV-NTLENTKSKAAEVMEKLELAEATTKDIE 3381
K+L S ED S+ + S LD +E + N L+ T ++ A + EKL L T KD+E
Sbjct: 205 KALESDYEDVSIQFDRLASLDQALDVPIESIQNALQQTGTEYANLTEKLTLLLDTIKDVE 264
Query: 3382 KLRDGYRPVAKR 3393
+ + KR
Sbjct: 265 SYAHSLKELLKR 276
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 29.9 bits (64), Expect = 8.0
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 16/80 (20%)
Query: 3646 KYLSLGQGQEGAALSLLEG----AISHGQWLILQNCHL-----LVSFLRELEKQLEL--- 3693
+Y+ + +LS EG A+ +G W++L +L L + R L+ EL
Sbjct: 935 EYIGTYVTDDNGSLSFREGVLVEALRNGYWIVLDELNLAPTDVLEALNRLLDDNRELFIP 994
Query: 3694 ----MTKPHPEYRLWLTTDP 3709
+ KPHPE+ L+ T +P
Sbjct: 995 ETQVLVKPHPEFMLFATQNP 1014
>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 272
Score = 29.9 bits (64), Expect = 8.0
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Query: 3176 DPQTQALTWIKKKEAKNNLKVLSFNDPQFLRQLEMAIKYGMPVLFQDVNEYIDPVVDNVL 3235
+P+ + T ++K++ ++ +K+ S + + R L + + PV Q + I PV+
Sbjct: 154 EPEVKQETNLQKEKKESKVKLES-KEEKISRNLRSSSRSISPVTEQPQSPKIQPVIPEKK 212
Query: 3236 EKNIKVESGRTFVMLG-STEVDYDPNFRMYLTTKLANPQFNPAAYAKAV 3283
EK+ K ES T S + T+ P +PAA +A+
Sbjct: 213 EKSEKKESSMTLRKRSVSPSSQNTARSPKRMATEPIEPASSPAASNQAI 261
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.321 0.137 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,423,321
Number of Sequences: 5004
Number of extensions: 795846
Number of successful extensions: 2218
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2169
Number of HSP's gapped (non-prelim): 54
length of query: 4153
length of database: 2,362,478
effective HSP length: 88
effective length of query: 4065
effective length of database: 1,922,126
effective search space: 7813442190
effective search space used: 7813442190
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 64 (29.9 bits)
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