Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001859-TA|BGIBMGA001859-PA|IPR003593|AAA ATPase,
IPR013594|Dynein heavy chain, N-terminal region 1, IPR013602|Dynein
heavy chain, N-terminal region 2, IPR011704|ATPase associated with
various cellular activities, AAA-5, IPR004273|Dynein heavy chain
(4153 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0829 - 20871810-20872011,20873226-20873359,20873480-208773... 38 0.23
10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967... 36 0.70
02_01_0121 + 890391-890429,890565-890730,891209-891769,892365-89... 33 3.7
01_06_1535 + 38057802-38057999,38058338-38058437,38058730-380588... 33 3.7
08_01_0047 - 328895-329404,329492-329821,330253-330626,330712-33... 33 5.0
05_07_0251 - 28677293-28677748,28677891-28678217 33 5.0
03_06_0247 + 32632495-32633619 33 6.5
10_08_0614 - 19238064-19238132,19238381-19238407,19238436-192385... 32 8.7
>10_08_0829 - 20871810-20872011,20873226-20873359,20873480-20877313,
20878057-20878177,20878414-20878451,20879096-20879218,
20879308-20879505,20880270-20880356
Length = 1578
Score = 37.5 bits (83), Expect = 0.23
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 3288 TVTVQGLEDQLLSVVVRAERSDLEEQRESLIIETSANKSLLSGLEDSLLRELATSTGNML 3347
TV + LE +++S+ A+ S EE+RES ++T S+L + L L M+
Sbjct: 1027 TVELSNLEREVISLT--AQLSSTEEERESSTLDTIREVSILRADKAKLEANLEDVNAQMI 1084
Query: 3348 DNVELVNTLENTKSKAAEVMEKLELA----EATTKDIEKLR 3384
+ L +K+K ++++ L + E T D++ +R
Sbjct: 1085 HYESQLEDLRESKTKIKDLVDSLNASKQNEEMLTTDVDNMR 1125
>10_08_0253 - 16196275-16196307,16196425-16196550,16196643-16196741,
16196822-16197001,16197090-16197371,16197471-16199141,
16199257-16199463,16199566-16199700,16199792-16200082,
16200403-16200621,16200876-16201034,16201120-16201181,
16201257-16201383,16201460-16201693,16201777-16202003,
16202163-16202257,16202341-16202468,16202574-16202594,
16202765-16202921,16203007-16203075,16203228-16203341,
16203415-16203491,16203576-16203688,16204432-16204507,
16204592-16204756,16204825-16204952,16205049-16205130,
16205426-16205548,16205633-16205860,16205933-16206034,
16206144-16206341,16206581-16206760,16206868-16207020,
16207690-16207797,16208201-16208355,16208786-16208912,
16209825-16209914,16209986-16210127,16210303-16210379,
16210467-16210582,16210638-16210773,16211130-16211198,
16211279-16211361,16211655-16211720,16211788-16211974,
16212054-16213547,16213635-16214165,16214234-16214363,
16214407-16215878,16216359-16216364,16216750-16217055,
16217364-16217468,16217577-16217772,16217862-16217929,
16218853-16220631,16221026-16221151,16221604-16221780,
16221997-16222128,16223461-16223498,16223710-16223788,
16224175-16224284,16224787-16224935,16225027-16225197,
16225281-16225552,16226355-16226442,16227942-16228369
Length = 5157
Score = 35.9 bits (79), Expect = 0.70
Identities = 55/218 (25%), Positives = 92/218 (42%), Gaps = 18/218 (8%)
Query: 1644 IFITMNPGY-AGRTELPESVKALFRP--VVCILPDLEMICQISLFSDGFLTAKVLAKKMT 1700
+F MNP AG+ ELP + ++ F V ++ D ++ +S + DG AK +A +
Sbjct: 735 MFACMNPATDAGKRELPYTFRSRFTEFFVDDLIDDDDLRLFVSKYLDGLHAAKGVADSIV 794
Query: 1701 VLYKVAREQLSKQSHYDWGLRALTAVLRMAGKLRRDSPGLSEIMVLMRALRDMNHPKFV- 1759
YK A+++ S++ D + LR + +AL D F+
Sbjct: 795 RFYKAAKKE-SEEKLQDGANQKPQFSLRSLSRSLGYIKNAERKFGFKKALYDGFCMFFLT 853
Query: 1760 FEDVP---LFLGLIKD-LFPGLECPRVGYPEF---NAAVLEVLEKD----GYVVLPHQVD 1808
D P + LI L G PR+ + ++ +L E D YV+ +
Sbjct: 854 MLDAPSAKIINNLIVSLLLDGRVPPRISFADYFVEKPKLLNGSESDDFLRSYVLTNSVTE 913
Query: 1809 KVVQL-YETMMTRHCTMLVGPTGGGKTVILHCLVKAQT 1845
+V L + ++ +L GPT GKT ++ L AQT
Sbjct: 914 HIVNLACAVYIKKYPVLLQGPTSSGKTSLVRFLA-AQT 950
>02_01_0121 + 890391-890429,890565-890730,891209-891769,892365-892845,
892952-893033,893818-894021
Length = 510
Score = 33.5 bits (73), Expect = 3.7
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 3008 SEAVNYLASLNREIDRLQKTLDGLNNRYETAMMRRQELQEETDLMMRRLVAADKLMSGLS 3067
+E YLA RE ++Q D + E A MR+ E+ D+ R A DKLMS L+
Sbjct: 408 AEKAKYLARFKREEIKIQAWEDHQRAKIE-AEMRKIEV----DVERMRARAQDKLMSQLA 462
Query: 3068 SEQKRWTEDLAALYVEQSRLIGNCLLATSFLSYTG 3102
S + E AA +++SR + TG
Sbjct: 463 SARHTADEKRAAAELKRSRAAAKTAEQADHIRRTG 497
>01_06_1535 + 38057802-38057999,38058338-38058437,38058730-38058890,
38059166-38059363,38059442-38059534,38059732-38059854,
38060637-38060884,38061004-38061175,38061407-38061493,
38061523-38061786,38062415-38062577,38062839-38062926,
38063010-38063079,38063566-38063694,38063773-38063811,
38065539-38065760,38065935-38065999,38066095-38066288,
38066539-38066805,38066908-38066995,38067091-38067216,
38067291-38067400,38067523-38067671
Length = 1117
Score = 33.5 bits (73), Expect = 3.7
Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
Query: 3280 AKAVVINYTVTVQGLEDQLLSVVVRAERSDLEEQRESLIIETSANKSLLSGLEDSLLREL 3339
A+ V Y T+ +E++L ER+ +++ + E +A K S +++ LL+E+
Sbjct: 78 AEKQVQEYRATLDDMEERLSKS--EDERATCQDKLNYVEQELAATKGRESAMQERLLKEV 135
Query: 3340 ATSTGNMLDNVELVNTLENTKSKAAEVMEKLELAEATTKDIEKLRDG 3386
D ++ + LE K + E + A+ K+ K +G
Sbjct: 136 GDFQERYCDQIKKIGELETQLKKEIDSRIAAESSSASAKESVKELEG 182
>08_01_0047 - 328895-329404,329492-329821,330253-330626,330712-330937,
331026-331475
Length = 629
Score = 33.1 bits (72), Expect = 5.0
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 2935 RNLQEMNCDLITQAQVKA-VKTHMKKSKKLDTMQQISKAGYGLLKFV 2980
R L EM C T Q+K +KT KK K++ ++++S AG+ + FV
Sbjct: 401 RALNEMFCTNFTGDQIKNHLKTWQKKFTKMNRLRKVSAAGWDEVNFV 447
>05_07_0251 - 28677293-28677748,28677891-28678217
Length = 260
Score = 33.1 bits (72), Expect = 5.0
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 2935 RNLQEMNCDLITQAQVKA-VKTHMKKSKKLDTMQQISKAGYGLLKFV 2980
R L EM C T Q+K +KT KK K++ ++++S AG+ + FV
Sbjct: 50 RALNEMFCTNFTGDQIKNHLKTWQKKFTKMNRLRKVSAAGWDEVNFV 96
>03_06_0247 + 32632495-32633619
Length = 374
Score = 32.7 bits (71), Expect = 6.5
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 4031 PLDRSTQFTKVTSWVSADEIEERPVTGCYVRGLYLEGARWDVDEGCLKRSHPKVLVTELP 4090
PLD +FT SW A+ R V GC + L + GC+KR PKV V L
Sbjct: 267 PLD-CLKFTP-HSWTMAERQAYRTV-GCTGNSIKLISMHFS---GCVKRGAPKVTVWRLE 320
Query: 4091 IMYIIPIEFHKLKLQNTLRTPVY 4113
+ I ++ H L L+ P +
Sbjct: 321 VYAKIWVKEHVLNLKTLWTQPAF 343
>10_08_0614 - 19238064-19238132,19238381-19238407,19238436-19238510,
19238637-19239317,19239423-19239554,19239676-19239723,
19239828-19239878,19240015-19240134,19241121-19241261,
19241701-19241865,19241981-19242160,19242314-19242445,
19242536-19242643,19242779-19242883,19243217-19243321,
19243407-19243463,19243991-19244010,19244299-19244377,
19245021-19245080,19245562-19245615,19246535-19246600,
19246938-19246990,19247361-19247450,19248152-19248249,
19248348-19248721
Length = 1029
Score = 32.3 bits (70), Expect = 8.7
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 3014 LASLNREIDRLQKTLDGLNNRYETAMMRRQELQEETDLMMRRLVAADKLMSGLSSEQKRW 3073
++SL +E+D+L++ L G E M+ RQ+L+E M RL ++ + L S +R
Sbjct: 438 ISSLKQELDQLRRGLIG-GASQEEIMILRQQLEEGQVKMQSRLEEEEEAKAALMSRIQRL 496
Query: 3074 TE 3075
T+
Sbjct: 497 TK 498
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.137 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,146,342
Number of Sequences: 37544
Number of extensions: 4624801
Number of successful extensions: 10722
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 10710
Number of HSP's gapped (non-prelim): 23
length of query: 4153
length of database: 14,793,348
effective HSP length: 97
effective length of query: 4056
effective length of database: 11,151,580
effective search space: 45230808480
effective search space used: 45230808480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 70 (32.3 bits)
- SilkBase 1999-2023 -