GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001859-TA|BGIBMGA001859-PA|IPR003593|AAA ATPase,
IPR013594|Dynein heavy chain, N-terminal region 1, IPR013602|Dynein
heavy chain, N-terminal region 2, IPR011704|ATPase associated with
various cellular activities, AAA-5, IPR004273|Dynein heavy chain
         (4153 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ973473-1|CAJ01520.1|  127|Anopheles gambiae hypothetical prote...    31   0.63 
AF437891-1|AAL84186.1|  127|Anopheles gambiae sensory appendage ...    31   0.63 
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    29   3.4  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    27   7.8  
AB090818-1|BAC57911.1|  285|Anopheles gambiae gag-like protein p...    27   7.8  

>AJ973473-1|CAJ01520.1|  127|Anopheles gambiae hypothetical protein
           protein.
          Length = 127

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 4/78 (5%)

Query: 41  RDLGDIIQVLIDFERIF--GLELKSIISDPTQIDDVRKRVKNLVYPIRTVDFSVFVFDNK 98
           R  G+  + L+D  R    G ELK I+ D  Q +  +   K     I+ +++   + + K
Sbjct: 38  RLFGNYYKCLLDQGRCTPDGNELKRILPDALQTNCEKCSEKQRDGAIKVINY--LIQNRK 95

Query: 99  ENWDVIMGDFWNEVRYLE 116
           + WDV+   F  E +YLE
Sbjct: 96  DQWDVLQKKFDPENKYLE 113


>AF437891-1|AAL84186.1|  127|Anopheles gambiae sensory appendage
           protein protein.
          Length = 127

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 4/78 (5%)

Query: 41  RDLGDIIQVLIDFERIF--GLELKSIISDPTQIDDVRKRVKNLVYPIRTVDFSVFVFDNK 98
           R  G+  + L+D  R    G ELK I+ D  Q +  +   K     I+ +++   + + K
Sbjct: 38  RLFGNYYKCLLDQGRCTPDGNELKRILPDALQTNCEKCSEKQRDGAIKVINY--LIQNRK 95

Query: 99  ENWDVIMGDFWNEVRYLE 116
           + WDV+   F  E +YLE
Sbjct: 96  DQWDVLQKKFDPENKYLE 113


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 3318 IIETSANKSLLSGLEDSLLRELATSTGNMLDNVELVNTLENTKSKAAEVMEKLELAEA-T 3376
            ++     KS+L+     LLRE       + D  + V     +K +A + +E+L++  A  
Sbjct: 281  VVTAKDEKSVLATEHQQLLREKTKLDLTISDLSDEVQGDNKSKERAEQELERLKITIAEK 340

Query: 3377 TKDIEKLRDGYRPVAKR 3393
             K++E++R  Y  + ++
Sbjct: 341  EKELEQVRPRYEAMRRK 357


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 1017 LMVSLKNEAMRERHWKELMAKTGQDFDM-SPDRFTLENMFAMELHKYQDVAEEIVNHAIK 1075
            L  S++ +  R R+ + L+AKT    D    D  + +  +      Y  V   + +   K
Sbjct: 338  LRTSIEEQEHRIRNREALVAKTDSTIDTYRADIESKKQEYVALKEAYGTVRRTLQDVQAK 397

Query: 1076 ELAIERGVKDVQE 1088
            + AIERG+++  E
Sbjct: 398  QAAIERGMRNASE 410


>AB090818-1|BAC57911.1|  285|Anopheles gambiae gag-like protein
           protein.
          Length = 285

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 613 KTPLFQVDAVLVPPDITMRPTSSEVCNILGYNI 645
           +TP  +V+   +PPD +    SSE+   LG  I
Sbjct: 128 RTPSMRVNCTNIPPDTSSEEISSEMSAALGVEI 160


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.321    0.137    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,025,183
Number of Sequences: 2123
Number of extensions: 164077
Number of successful extensions: 349
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 347
Number of HSP's gapped (non-prelim): 9
length of query: 4153
length of database: 516,269
effective HSP length: 78
effective length of query: 4075
effective length of database: 350,675
effective search space: 1429000625
effective search space used: 1429000625
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)