Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001858-TA|BGIBMGA001858-PA|IPR013594|Dynein heavy chain,
N-terminal region 1
(529 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual 33 0.13
SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2 |Schizosacch... 32 0.23
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 31 0.40
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 29 1.6
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 29 1.6
SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase Mag1|Schizo... 28 2.8
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr... 28 2.8
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 28 2.8
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 6.5
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 27 8.5
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 27 8.5
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 27 8.5
>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 656
Score = 32.7 bits (71), Expect = 0.13
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 9/98 (9%)
Query: 1 MSGSD-TPSVIEGLDVELDFFKDARVLWFKERILSFIGMSDDELFYNMFDDAEVKRLFTN 59
M+GSD TPS+ +L + A+ L + +S EL + D+ +V T
Sbjct: 180 MAGSDRTPSMPATTLADLRLLQKAKELGKR--------LSGKELPTRVGDNGDVMLDMTG 231
Query: 60 YVTSPIKPNEQELDKRTFYVTKIIVDKLIHEDKEFTEW 97
Y +S N EL + TF +++KL+ ED+E W
Sbjct: 232 YKSSAANINIAELARETFKDEFPMIEKLLREDEEGNLW 269
>SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 213
Score = 31.9 bits (69), Expect = 0.23
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 331 PIKSDQQKSTAEEVIADITELVGTVEWTIEHIE----GEIHFPMPDIPALMDEQRGRVGF 386
P KS+ +K + EE++ ++++ G WTIE G + D L +E + G
Sbjct: 116 PSKSEIEKMSEEELMESLSKIKGVKRWTIEMYSIFTLGRLDIMPADDSTLKNEAKEFFGL 175
Query: 387 NDPALTKQLEE 397
+ T+++E+
Sbjct: 176 SSKPQTEEVEK 186
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 31.1 bits (67), Expect = 0.40
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Query: 7 PSVIEGLDVELDF--FKDARVLWFKERILSFIGMSDDELFYNMFDDAEVKRLFTNYVTSP 64
P +E L E DF F V W E + + D F N++ + E+ L++ Y
Sbjct: 155 PPALEILSSEKDFSIFHRLSVAWVGEYSSVTMLVPDSSAFLNVYTNTELAYLYSMYAAED 214
Query: 65 IKP--NEQELDKRTFYVTKIIVDKLIH 89
+K ++ L + Y +I K H
Sbjct: 215 VKTLIHQHILVNQRVYAEDVIEPKTFH 241
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 29.1 bits (62), Expect = 1.6
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 22 DARVLWFKERILSFIGMSDDELFYNMFDDAEVKRLFTNYVTSPIKPNE--QELDKRTFYV 79
DA V ++E IL + M L N+ + + R + V +KP E + D+ V
Sbjct: 27 DANVTLYQEAILRMLNMGQRRLIVNIDELRDYNRELADGVL--LKPLEYVEPFDEALRNV 84
Query: 80 TKIIVDKLIHED 91
++D ++H+D
Sbjct: 85 VSTLIDPVVHKD 96
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 29.1 bits (62), Expect = 1.6
Identities = 45/227 (19%), Positives = 85/227 (37%), Gaps = 12/227 (5%)
Query: 254 IPLAESSYLTMLKMPDYVLTGITSGKAYIRLFEKQFREITVLTPENSQSTLSRQLSYAGA 313
IP+ E +T + +P +T +T+ I E T +TP +T+ L A
Sbjct: 38 IPMEE---ITTMTIPMEEITTMTTPMEEITTITTPMEETTTITPMVETTTI---LPMAAM 91
Query: 314 HHIMDETASQSTRIFEEPIKSDQQKSTAEEVIADITELVGTVEWTIEHIEGEIHFPMPDI 373
M ET + T E + ++T + + T + VE I +E + PM +
Sbjct: 92 TTPMVETTTIPT---VETTTTPMVETTTITPMVETTTITPMVEAMITLMEETMTTPMEET 148
Query: 374 PALMDEQRGRVGFNDPALTKQLEEAVMMWQNHIDTTI---AACLGKVREGEGPVAEYKYW 430
++ + T + E + TT A + + P+ E
Sbjct: 149 TTILPMAAMTTPMEETTTTTPMVETTTIPTVETMTTPMVEAMTILPMAAMTTPMEETTTT 208
Query: 431 RERDAEISLLVEQLKQPMVVKILTLLEKAGSTYLEVIEDESPLQQVV 477
+ + +VE + PMV + T E G + + I +P++ ++
Sbjct: 209 PMEETTTTPMVETMITPMVEAMTTPTEVVGRSMVSTIRTTTPMEAMI 255
>SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase
Mag1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 228
Score = 28.3 bits (60), Expect = 2.8
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 331 PIKSDQQKSTAEEVIADITELVGTVEWTIE 360
P K + ++ + EE+I +T++ G WT+E
Sbjct: 124 PTKEEAERLSNEELIERLTQIKGIGRWTVE 153
>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
2|||Manual
Length = 539
Score = 28.3 bits (60), Expect = 2.8
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 317 MDETASQSTRIFEEPIKSDQQKSTAEEVIADITELVGTVEWTIEHIEGEIHFPMPDIPA 375
++E A QS E+ +K + K TA+ + DI +G V +++ E H P+ + A
Sbjct: 60 VEEEADQSQVQMEQQMKDEFPKLTADVMSDDIELQLGAVTKFRKYLSKETHPPIDQVIA 118
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 28.3 bits (60), Expect = 2.8
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 10 IEGLDVELDFFKDARVLWFKERILSFIGMSD--DELFYNMFDDAEVKRLFTNYVTSPIKP 67
I G D+ F D K IL ++D + L + DDAE+ R ++ T P +P
Sbjct: 193 IRGYDIRSIFGWDFLSTTLKSLILHHCDLADLSEVLIKLVLDDAELYRFRSSRQTYPQQP 252
Query: 68 NEQELDK 74
N Q ++
Sbjct: 253 NSQPCEQ 259
>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 841
Score = 27.1 bits (57), Expect = 6.5
Identities = 28/151 (18%), Positives = 60/151 (39%), Gaps = 8/151 (5%)
Query: 202 EIDGTLEYFTIVRSVPRVIQYPKLIPTFGALTPQLAQRNRRYIYFIRQAQGEIPLAESSY 261
+I L+YF + ++P Y +I GA+ + RY++F + E+S
Sbjct: 166 DIAEKLQYFWEIHAIPAYHHYKPIIQR-GAMDGYM---QLRYVFFPAAKATITQMIETSI 221
Query: 262 LTMLKMPDYVLTGITSGKAYIRLFEKQFREITVLTPENSQSTLSRQLSYAGAHHIMDETA 321
+ D + Y + E++ T S +S ++ + AH+ T
Sbjct: 222 RFLRTFLDMHIKPQLQ-HIYESVVEEKSEAFASATSSKILSEMSASMASSSAHYTSSPTI 280
Query: 322 SQSTRIFEEPI---KSDQQKSTAEEVIADIT 349
T+ E P+ ++++ +T + + +T
Sbjct: 281 LSRTKSVETPVPMEAAEEEPATEYSIPSSVT 311
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1016
Score = 26.6 bits (56), Expect = 8.5
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 283 RLFEKQF-REITVLTPENSQSTLSRQLSYAGAHHIMDETASQST 325
+ F+++F RE+ VLTP NS T Q + G + ++ +T
Sbjct: 970 KYFDEEFTRELPVLTPVNSILTKEMQQHFEGFSYSCEDDKPSTT 1013
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 26.6 bits (56), Expect = 8.5
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 463 YLEVIEDESPLQQVVETLPEMVESIYMMWVL 493
+L+ +E E LQQ++E + S++M W++
Sbjct: 1015 FLQDLEIEDALQQILEVTFTFLNSMHMDWIV 1045
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 26.6 bits (56), Expect = 8.5
Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 22 DARVLWFKERILSFIGMSDDELFYNMFDDAEVKRLFTNYVTSPIKPNEQELDKRTFYVTK 81
DAR+L E I +G DE Y E+ R F +YV + ++ L T
Sbjct: 1604 DARMLL--EIISRLVGTISDETSYLRDYSVEILRTFNSYVL--VMNSDDLLSYSQILWTA 1659
Query: 82 IIVDKLIHEDKEFTE 96
I IHED EF E
Sbjct: 1660 IACLTTIHED-EFIE 1673
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.136 0.395
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,256,428
Number of Sequences: 5004
Number of extensions: 93120
Number of successful extensions: 275
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 266
Number of HSP's gapped (non-prelim): 16
length of query: 529
length of database: 2,362,478
effective HSP length: 76
effective length of query: 453
effective length of database: 1,982,174
effective search space: 897924822
effective search space used: 897924822
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)
- SilkBase 1999-2023 -