GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001858-TA|BGIBMGA001858-PA|IPR013594|Dynein heavy chain,
N-terminal region 1
         (529 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0477 - 3688357-3690042                                           32   0.99 
07_03_0488 + 18674465-18674873,18675343-18675520,18675932-186760...    31   1.7  
03_06_0705 + 35647838-35647850,35647966-35648105,35648439-356488...    31   3.0  
12_01_0537 - 4215833-4216005,4216168-4216366,4216399-4216497,421...    30   4.0  
11_04_0176 - 14536305-14537315                                         30   4.0  
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324...    30   4.0  
06_01_0080 + 644021-645463                                             29   9.2  

>11_01_0477 - 3688357-3690042
          Length = 561

 Score = 32.3 bits (70), Expect = 0.99
 Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 11  EGLDVELDFFKDARVLWFKERILSFIGMSDDELFYNMFDDAEVKRLFTNYVTSPIKPNEQ 70
           +G   EL F++   V+   +R L ++ +    +  +MFDD + + L   Y + PI+P   
Sbjct: 215 DGKAEELSFWETDMVVPVGDRRLCWVDLCRGIILCDMFDDGD-ETLRPRYFSLPIEPPAD 273

Query: 71  ELDKRTFYVTK 81
           + D+R   ++K
Sbjct: 274 DRDRRRCQMSK 284


>07_03_0488 +
           18674465-18674873,18675343-18675520,18675932-18676072,
           18677736-18677856,18678570-18678704,18679380-18679637
          Length = 413

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 15/40 (37%), Positives = 20/40 (50%)

Query: 177 GDGKPQMGTPDDMYSFPAPPEDLDPEIDGTLEYFTIVRSV 216
           GDG+P+   P D  S    P+D DP + G L Y    R +
Sbjct: 51  GDGEPRQRGPCDYASGEWVPDDDDPAVSGGLRYDQTCREI 90


>03_06_0705 +
           35647838-35647850,35647966-35648105,35648439-35648824,
           35648930-35649110,35649498-35649590,35649667-35649806,
           35649906-35650005
          Length = 350

 Score = 30.7 bits (66), Expect = 3.0
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 385 GFNDPALTKQLEEAVMMWQNHIDTTIAACLGKVREGEGPVAEYKYWRERDA 435
           G  +PA  +QLE  +   ++  D ++   L ++  G GP A  KYW + +A
Sbjct: 140 GLTNPAHKEQLEARIARMKD--DPSLKPILDEIENG-GPAAMMKYWNDPEA 187


>12_01_0537 -
           4215833-4216005,4216168-4216366,4216399-4216497,
           4216599-4216809,4217264-4217466,4217557-4217633,
           4217874-4217949,4218342-4218425
          Length = 373

 Score = 30.3 bits (65), Expect = 4.0
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 317 MDETASQSTRIFEEPIKSDQQKSTAEEVIADITELVGTVEWTIEHIEGEIHFPMPDIPAL 376
           M+  AS S  +  E    + +K  AEE++ +ITELV   E  ++     I+F    I + 
Sbjct: 65  MEAPASSSFSMVAEEDSEELRKEGAEEILENITELVN--ETIVDDGTYSIYFSKEGILSA 122

Query: 377 MDEQRGRVG 385
           +D+ +   G
Sbjct: 123 IDDGKSEGG 131


>11_04_0176 - 14536305-14537315
          Length = 336

 Score = 30.3 bits (65), Expect = 4.0
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 428 KYWRERDAE----ISLLVEQLKQPMVVKILTLLEKAGSTYLEVIEDESPLQQVVE 478
           +YW E  A     + L+ E L Q  V  + TL E  G  +    ED+  +QQ+VE
Sbjct: 192 EYWDESQARPEKVLFLMYEDLLQDTVGNLRTLAEFMGCGFSRQEEDDGIVQQIVE 246


>03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,
            3242494-3242836,3244138-3248540,3248928-3249107,
            3249108-3250892,3251055-3252173
          Length = 2727

 Score = 30.3 bits (65), Expect = 4.0
 Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 292  ITVLTPENSQSTLSRQLSYAGAHHIMDETASQSTRIFEEPIKSDQQKSTAEEVIADITEL 351
            I++L  E   + L +QLS   A  +M    SQ ++I  E  K++++  T E+ +AD  E+
Sbjct: 1103 ISLLNSEKDAALLQQQLSSERACDLM----SQLSKIQLELEKAEEKMQTMEQKLADKNEM 1158

Query: 352  VGTVEWTIE 360
            V  ++ +++
Sbjct: 1159 VDFLQLSLQ 1167


>06_01_0080 + 644021-645463
          Length = 480

 Score = 29.1 bits (62), Expect = 9.2
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 332 IKSDQQKSTAEEVIADITELVGTVEWTIEHIEGEIHFPMPDIPALMDEQ 380
           IK DQ      + + D T + GT +WT++    E+    P I A +D +
Sbjct: 244 IKDDQGSGHLVDKVLDKTGMKGTGKWTVQQ-AAELSVAAPTIEASLDSR 291


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.136    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,019,297
Number of Sequences: 37544
Number of extensions: 563637
Number of successful extensions: 1233
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1232
Number of HSP's gapped (non-prelim): 8
length of query: 529
length of database: 14,793,348
effective HSP length: 85
effective length of query: 444
effective length of database: 11,602,108
effective search space: 5151335952
effective search space used: 5151335952
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)