Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001858-TA|BGIBMGA001858-PA|IPR013594|Dynein heavy chain,
N-terminal region 1
(529 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1) 83 4e-16
SB_14439| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 5e-08
SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 8e-06
SB_7147| Best HMM Match : DUF1335 (HMM E-Value=2.6) 43 7e-04
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002) 38 0.027
SB_17213| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.11
SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.3
SB_36407| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.0
SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14) 30 4.0
SB_47578| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.0
SB_28246| Best HMM Match : M (HMM E-Value=0.0007) 30 5.3
SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.3
SB_22531| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.3
SB_36730| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.0
SB_2681| Best HMM Match : hATC (HMM E-Value=0.021) 29 9.3
SB_29997| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.3
>SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1)
Length = 667
Score = 83.4 bits (197), Expect = 4e-16
Identities = 61/229 (26%), Positives = 105/229 (45%), Gaps = 11/229 (4%)
Query: 245 YFIR-QAQGEIPLAESSYLTMLKMPDYVLTGITSGKAYIRLFEKQFREITVLTPENSQST 303
YF+R QA G +PL S + +P G + + + L + V P S +
Sbjct: 197 YFVRTQASGPVPLPSSIHEADDMLPLCFEFGSLNSQTLLML---EHLLTLVYMPLLSHNA 253
Query: 304 LSRQLSYAGAHHIMDETASQSTRIFEEPIKSDQQKSTA----EEVIADITELVGTVEWTI 359
R + + S+ T + + ++ ++ + +E + +I + + TI
Sbjct: 254 SHRTEGISEGRGTTNRRGSEGTDMQDATSQATEESRSKVILRDEFLMNIQKFSSNINRTI 313
Query: 360 EHIEGEIHFPMPDIPALMDEQRGRVGFNDPALTKQLEEAVMMWQNHIDTTIAACLGKVRE 419
+EG+I MPD+ ++ + + DP + LEE + W+ I + + L K +
Sbjct: 314 HQLEGDIRLEMPDL--VLGDDITELS-KDPEIVNTLEETLHNWEVTISSALEMQLKKTPQ 370
Query: 420 GEGPVAEYKYWRERDAEISLLVEQLKQPMVVKILTLLEKAGSTYLEVIE 468
G GP+AE +WRER+A +S + EQLK P V KI+ +L K S L E
Sbjct: 371 GTGPLAEIDFWRERNATLSAIAEQLKLPTVKKIVAVLTKVNSENLANFE 419
Score = 57.6 bits (133), Expect = 2e-08
Identities = 34/120 (28%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 410 IAACLGKVREGEGPVAEYKYWRERDAEISLLVEQLKQPMVVKILTLLEKAGSTYLEVIED 469
I A L KV +A ++Y R AE++ + K V+ L+ LE+ + + +
Sbjct: 403 IVAVLTKVNSEN--LANFEYHR---AELNKYYTEAKDN--VRFLSTLER----HFKNLAH 451
Query: 470 ESPLQQVVETLPEMVESIYMMWVLSKGYKADETMVPLLSRISWALCDKLERFLDVHKLFE 529
+ V+ET+P M+ ++ M+W++S+ Y DE MVPL+ RI+W L +++ + +++ + +
Sbjct: 452 GASFNIVLETIPSMMNALRMVWIISRHYNRDERMVPLMERIAWELSERVAKTVNIRTILK 511
Score = 29.1 bits (62), Expect = 9.3
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 22 DARVLWFKERILSFIGMSDDELFYNMFDDAEVK 54
D R+ W ++R+ +G++D E+F ++ + E K
Sbjct: 3 DTRIEWIRDRVYCGVGITDPEVFEDLLNRDEGK 35
>SB_14439| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 686
Score = 56.4 bits (130), Expect = 5e-08
Identities = 56/272 (20%), Positives = 127/272 (46%), Gaps = 39/272 (14%)
Query: 291 EITVLTPENSQSTLSRQLSYAGAHHIMDETASQSTRIFEEPIKSDQQ--KSTAEEVIADI 348
E VLTP+N + TL Q ++++ + Q + ++ + +Q S + +A +
Sbjct: 141 ENAVLTPDNLEKTL--QFGTVKSNYV-ESLLRQMSNVYAPLLFGNQSWPDSIKNDFLAHL 197
Query: 349 TELVGTVEWTIEHIEGEIHFPMPDIPALMDEQRGRVGFNDPALTKQLEEAVMMWQNHIDT 408
+ + + T ++G+ +P ++ ++ + ++LE A++ W I
Sbjct: 198 HKFMANLTDTRYKMQGKTVLYVPSESTTINIEQAS---KNKEFVQRLEAAMIHWTRQIKE 254
Query: 409 TIAAC-LGKVREGEGPVAEYKYWRERDAEISLLVEQLKQPMVVKILTLLEKAGSTYL--- 464
+++ + E GP+ E ++WR R A++S + EQL +P V +I LE + S+Y+
Sbjct: 255 VLSSQDTFETAENSGPLEEIEFWRSRCADLSGISEQLDKPGVKRIQATLELSKSSYVTPF 314
Query: 465 ----EVIEDES---------------PLQQVVET--------LPEMVESIYMMWVLSKGY 497
++I+D S P +++ + LP ++ +I M+W+ S+ Y
Sbjct: 315 LKLSKLIQDGSSQAQSNLKFLSTLKGPCEELAQAQPKDVPAMLPRILHTIRMVWMNSEHY 374
Query: 498 KADETMVPLLSRISWALCDKLERFLDVHKLFE 529
++ E + +L ++S + + +++ +FE
Sbjct: 375 RSRERLTGILRKVSNEIIKRCSTKINLDDIFE 406
>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4700
Score = 49.2 bits (112), Expect = 8e-06
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 379 EQRGRVGFNDPALTKQLEEAVMMWQNHIDTTIAACLGK-VREGE--GPVAEYKYWRERDA 435
E+RG D +L +E ++ W + I T + + + EG GP+ E +W+ R A
Sbjct: 754 EERGETF--DRSLVHSIESVIIDWSHQIQTVLKRSSAQPLLEGTNPGPLVELDFWKARAA 811
Query: 436 EISLLVEQLKQPMVVKILTLLEKAGSTY 463
+ + EQL P V ++ LLEK S+Y
Sbjct: 812 NLECIFEQLHDPKVRRMAELLEKTQSSY 839
>SB_7147| Best HMM Match : DUF1335 (HMM E-Value=2.6)
Length = 344
Score = 42.7 bits (96), Expect = 7e-04
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 8/133 (6%)
Query: 339 STAEEVIADITE-LVGTVEWTIEHIEGEIHFPMPDIPALMDEQRGRVGFNDPALTKQLEE 397
S + + + D+ LV +E ++ ++ P+P I L + P + LE
Sbjct: 129 SVSSDKLMDLLHRLVANIEVMEGSLKDQVVLPLPSIEVL--SEAAAYSSRRPVVIHVLET 186
Query: 398 AVMMWQNHIDTTI-----AACLGKVREGEGPVAEYKYWRERDAEISLLVEQLKQPMVVKI 452
V+ W I T+ K GP+ E + W E IS++ EQL + + I
Sbjct: 187 TVISWIKLIKGTLKLDPDTEVAKKFGLKPGPLDEIEMWSEHLERISMINEQLSSHVAMNI 246
Query: 453 LTLLEKAGSTYLE 465
+ LE A STY +
Sbjct: 247 IMNLEDAHSTYAQ 259
>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
Length = 3616
Score = 37.5 bits (83), Expect = 0.027
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 393 KQLEEAVMMWQNHIDTTIAAC--LGKVREGEGPVAEYKYWRERDAEISLLVEQLKQPMVV 450
+Q+E V W I+ +A + K + GP AE +W++R A+ + L++Q+K
Sbjct: 255 EQIEAVVSAWIKQIEQVLAESEQMRKEADDVGPKAELDHWKKRMAKFNSLLDQIKGSDCK 314
Query: 451 KILTLLEKAGSTYLE 465
++ +L A S L+
Sbjct: 315 AVVGVLHAAKSKLLK 329
>SB_17213| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 652
Score = 35.5 bits (78), Expect = 0.11
Identities = 21/96 (21%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Query: 371 PDIPALMDEQRGRVGFNDPALTKQLEEAVMMWQNHIDTTIAACL-GKVREGEGPVAEYKY 429
P+ D ++ R +P + ++ E V+ W I+ + L + GP++E
Sbjct: 179 PESQITTDFKQNRAAAVNPVILQEYENLVLDWITTIENILTDGLEDRADSHAGPLSELDR 238
Query: 430 WRERDAEISLLVEQLKQPMVVKILTLLEKAGSTYLE 465
W+ R ++ + +QLK ++ +L A S L+
Sbjct: 239 WKRRQKVLTSVTDQLKGKECKAVIAVLITAKSKVLK 274
>SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4994
Score = 31.9 bits (69), Expect = 1.3
Identities = 25/110 (22%), Positives = 56/110 (50%), Gaps = 3/110 (2%)
Query: 336 QQKSTAEEVIADITELVGTVEWTIEHIEGEIHFPMPDIPALMDEQRGRVGFNDPALTKQL 395
QQ + ++E++ + ELV + +E + ++ F L+ + G D + K+
Sbjct: 256 QQLAASQEIVTALEELVESWCKQVEKMLKDVRFLGLIFFKLIHKNLRIEG--DGVIWKK- 312
Query: 396 EEAVMMWQNHIDTTIAACLGKVREGEGPVAEYKYWRERDAEISLLVEQLK 445
+ +M+ ++ + + + + GP+AE ++W+ R A+ + LVEQ+K
Sbjct: 313 KTMIMVIDLNLVLAESEQMRREADDTGPMAELEHWKMRMAKFNSLVEQIK 362
>SB_36407| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 344
Score = 30.7 bits (66), Expect = 3.0
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 25 VLWFKERILSFIGMSDDELFYNMFDDAEVKRLFTNYVTSPIKP 67
V WF ++ + + D FY++ D+ + F ++ S I P
Sbjct: 195 VCWFPTHVMHYFLVYDSNRFYHLSDETKFLSFFVSHANSSINP 237
>SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)
Length = 1709
Score = 30.3 bits (65), Expect = 4.0
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 316 IMDETASQSTRIFEEPIKSDQQKSTAEEVIADITELVGTVE 356
+ +E R+ E I+ +Q KS+ E I+D+T+ +G+V+
Sbjct: 1005 VSEELQLSKRRVMEIEIEKEQLKSSHGEEISDLTKKIGSVQ 1045
>SB_47578| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 744
Score = 30.3 bits (65), Expect = 4.0
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 373 IPALMDEQRGRVGFNDPALTKQLEEAVMMWQNHIDTTIAACLGKVREGEGPVAEYKYWRE 432
+ +L+ E RG DP L K + A N + ++ AC G +RE + Y++ ++
Sbjct: 411 VKSLVSEARGCYSKLDPVLDK-ISHAT----NRVQSSCQACFGAIREAKERCL-YEFCKQ 464
Query: 433 RDAEISLLVEQL 444
DA S L+ L
Sbjct: 465 LDARESQLMRDL 476
>SB_28246| Best HMM Match : M (HMM E-Value=0.0007)
Length = 1121
Score = 29.9 bits (64), Expect = 5.3
Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 3/104 (2%)
Query: 262 LTMLKMPDYVLT-GITSGKAYIRLFE--KQFREITVLTPENSQSTLSRQLSYAGAHHIMD 318
LT +K VLT G+ +G Y L E K E T P N+ T + + A D
Sbjct: 998 LTGVKYSGLVLTYGLFTGVKYSGLPEGTKVLPEYTPRRPVNTSRTSASDYTDTEALTYAD 1057
Query: 319 ETASQSTRIFEEPIKSDQQKSTAEEVIADITELVGTVEWTIEHI 362
TA Q+ E+P+ + Q S + AD G E +E I
Sbjct: 1058 LTAPQAYSDGEKPMGTPQFGSRRTSLTADFMAEEGRRERELERI 1101
>SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 695
Score = 29.9 bits (64), Expect = 5.3
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 9/96 (9%)
Query: 296 TPENSQSTLSRQLSYAGAHHIMDETASQSTRIFEEPIKS-DQQKSTAEEVIADITELVGT 354
TP++ +ST S L ++ DE + + ++ + S +Q+ T E++ + + +
Sbjct: 292 TPDDEESTASTDLLFS------DEEDAVEHEVHDQKVPSYEQEVPTGEDIREPVAKRLKM 345
Query: 355 VEWTIEHIEGEI-HFPMP-DIPALMDEQRGRVGFND 388
+ I+ + FP P DIP LM RGR ND
Sbjct: 346 EPSSYTCIDKPLFRFPPPIDIPNLMIPIRGRSFVND 381
>SB_22531| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 579
Score = 29.9 bits (64), Expect = 5.3
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 294 VLTPENSQSTLSRQLSYAGAHHIMDETASQSTRIFEEPIKSDQQKSTAEEVIA 346
+ + + + S + R L YA + T ++ T EPI S + S A V+A
Sbjct: 133 IASSKGTHSKIERSLKYAREREVTIATVTKETNCEMEPILSQELPSQAHTVVA 185
>SB_36730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 29.5 bits (63), Expect = 7.0
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 206 TLEYFTIVRSVPRVIQYPKLIPTFGALTPQLAQRNRRYIYFIRQAQGEIPLAESSY 261
+L Y T +R++ R+++ K P GA+TP + + +Y IR + + SS+
Sbjct: 50 SLVYLTWIRTLARLLE--KRSPYHGAITPLSRYQGKTTLYLIRLGKQGYTVVTSSF 103
>SB_2681| Best HMM Match : hATC (HMM E-Value=0.021)
Length = 248
Score = 29.1 bits (62), Expect = 9.3
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 358 TIEHIEGEIHFPMPDIPALMDEQRGRVGFNDPALTKQLEEAVMMWQNHIDT 408
++E ++ F ++ +L++E +G D + EE V W +H+DT
Sbjct: 96 SVEELQEFGFFSNDEVASLVEELPSYLGAADGVVCTTEEEKVSWWADHVDT 146
>SB_29997| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 29.1 bits (62), Expect = 9.3
Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 206 TLEYFTIVRSVPRVIQYPKLIPTFGALTPQLAQRNRRYIYFIRQAQGEIPLAESSYLTML 265
+L Y T +R++ R+++ K IP + A+ P + + +Y IR + + SS+
Sbjct: 50 SLVYLTWIRTLARLLE--KRIPYYCAIAPLSRYQGKTTLYLIRLGKQGYTVVTSSFQESG 107
Query: 266 KMPDYVLTGITSGKAYIRL 284
+ + +S +A +R+
Sbjct: 108 SIAQWYGIRFSSKRARVRI 126
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.136 0.395
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,821,403
Number of Sequences: 59808
Number of extensions: 623702
Number of successful extensions: 1309
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1291
Number of HSP's gapped (non-prelim): 23
length of query: 529
length of database: 16,821,457
effective HSP length: 85
effective length of query: 444
effective length of database: 11,737,777
effective search space: 5211572988
effective search space used: 5211572988
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)
- SilkBase 1999-2023 -