GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001858-TA|BGIBMGA001858-PA|IPR013594|Dynein heavy chain,
N-terminal region 1
         (529 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-4235|AAF56793.2| 5106|Drosophila melanogaster CG1842-PA...    45   3e-04
AE014297-996|AAF54422.3| 4671|Drosophila melanogaster CG9492-PA ...    37   0.060
BT011391-1|AAR96183.1|  374|Drosophila melanogaster AT28259p pro...    34   0.56 
X80839-1|CAA56811.1| 1477|Drosophila melanogaster tumor-supresso...    33   0.74 
AY051653-1|AAK93077.1| 1477|Drosophila melanogaster LD05287p pro...    33   0.74 
AE014297-4107|AAN14107.1| 1477|Drosophila melanogaster CG5954-PB...    33   0.74 
AE014297-4106|AAF56691.1| 1477|Drosophila melanogaster CG5954-PA...    33   0.74 
AE014297-1403|AAF54717.4| 1975|Drosophila melanogaster CG6977-PA...    31   3.0  
AF210453-1|AAF21041.1| 4559|Drosophila melanogaster dynein heavy...    31   3.9  
U59923-1|AAC47469.1| 1714|Drosophila melanogaster glutamyl-proly...    31   5.2  
M74104-1|AAA28594.1| 1714|Drosophila melanogaster transfer RNA-G...    31   5.2  
AE014296-2708|AAS64984.1|  330|Drosophila melanogaster CG33257-P...    31   5.2  
BT021421-1|AAX33569.1| 1098|Drosophila melanogaster LD02690p pro...    30   9.1  
AE013599-2039|AAF58149.3| 1098|Drosophila melanogaster CG8155-PA...    30   9.1  

>AE014297-4235|AAF56793.2| 5106|Drosophila melanogaster CG1842-PA
           protein.
          Length = 5106

 Score = 44.8 bits (101), Expect = 3e-04
 Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 12/134 (8%)

Query: 344 VIADITELVGTVEWTIEHIEGEIHFP----MPDIPAL-MDEQRGRVGFN----DPALT-- 392
           ++ +I E    + WTI HI      P    +P   A   ++   RV  +    D  +T  
Sbjct: 474 LLKEIEEFQSEITWTINHIVWAFSLPSSYILPGQEATEFEDAIIRVPVDPKRLDLVITYT 533

Query: 393 -KQLEEAVMMWQNHIDTTIAACLGKVREGEGPVAEYKYWRERDAEISLLVEQLKQPMVVK 451
            +QLEE V  W  ++  T+        +   P+AE++YW + + E+   +EQLK   VV 
Sbjct: 534 QQQLEEVVDGWIKYLKKTMKTLTDAKLDDFTPMAEHRYWHKMEVELYGTLEQLKTEFVVA 593

Query: 452 ILTLLEKAGSTYLE 465
           +L  L    S  L+
Sbjct: 594 VLQRLTDDKSPVLD 607



 Score = 35.5 bits (78), Expect = 0.18
 Identities = 17/67 (25%), Positives = 32/67 (47%)

Query: 463 YLEVIEDESPLQQVVETLPEMVESIYMMWVLSKGYKADETMVPLLSRISWALCDKLERFL 522
           YLE +      + VV  +P ++  +  +W +S  Y  D  M  LL +IS     K++  +
Sbjct: 636 YLEKVRSYESFKMVVLQIPNIMVGLRHIWTMSSHYCRDPEMQVLLCQISNVFVQKVKSII 695

Query: 523 DVHKLFE 529
           +   +F+
Sbjct: 696 NFENIFK 702



 Score = 33.9 bits (74), Expect = 0.56
 Identities = 19/70 (27%), Positives = 31/70 (44%)

Query: 209 YFTIVRSVPRVIQYPKLIPTFGALTPQLAQRNRRYIYFIRQAQGEIPLAESSYLTMLKMP 268
           Y  + + VP  ++ P++   FG +         +YIY +R+ + EIP          +MP
Sbjct: 216 YVEVKKLVPAYVKTPQVHCHFGRMESCDLDPKIKYIYIVRKNRREIPNFSDVSACFAQMP 275

Query: 269 DYVLTGITSG 278
            Y L G   G
Sbjct: 276 LYFLLGTVRG 285


>AE014297-996|AAF54422.3| 4671|Drosophila melanogaster CG9492-PA
           protein.
          Length = 4671

 Score = 37.1 bits (82), Expect = 0.060
 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 2/74 (2%)

Query: 394 QLEEAVMMWQNHIDTTIAAC--LGKVREGEGPVAEYKYWRERDAEISLLVEQLKQPMVVK 451
           QLEE V  W   I   +     L K  +  GP  E +YW++R A+ S L+  L+   V  
Sbjct: 258 QLEERVNNWTKGILKILGESEQLRKENDHSGPQDELEYWKKRGAQFSQLLAHLQDKEVQF 317

Query: 452 ILTLLEKAGSTYLE 465
            L  L  AGS  ++
Sbjct: 318 TLHCLFLAGSRIIK 331


>BT011391-1|AAR96183.1|  374|Drosophila melanogaster AT28259p
           protein.
          Length = 374

 Score = 33.9 bits (74), Expect = 0.56
 Identities = 19/70 (27%), Positives = 31/70 (44%)

Query: 209 YFTIVRSVPRVIQYPKLIPTFGALTPQLAQRNRRYIYFIRQAQGEIPLAESSYLTMLKMP 268
           Y  + + VP  ++ P++   FG +         +YIY +R+ + EIP          +MP
Sbjct: 209 YVEVKKLVPAYVKTPQVHCHFGRMESCDLDPKIKYIYIVRKNRREIPNFSDVSACFAQMP 268

Query: 269 DYVLTGITSG 278
            Y L G   G
Sbjct: 269 LYFLLGTVRG 278


>X80839-1|CAA56811.1| 1477|Drosophila melanogaster tumor-supressor
            protein.
          Length = 1477

 Score = 33.5 bits (73), Expect = 0.74
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 488  YMMWVLSKGYKADETMVPLLSRISWALCDKLERFLD 523
            Y +W L+  +K D+     L   SW +C+ +ER LD
Sbjct: 1281 YRLWQLNSAFKLDDVRTNPLHWTSWDVCEYIERALD 1316


>AY051653-1|AAK93077.1| 1477|Drosophila melanogaster LD05287p protein.
          Length = 1477

 Score = 33.5 bits (73), Expect = 0.74
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 488  YMMWVLSKGYKADETMVPLLSRISWALCDKLERFLD 523
            Y +W L+  +K D+     L   SW +C+ +ER LD
Sbjct: 1281 YRLWQLNSAFKLDDVRTNPLHWTSWDVCEYIERALD 1316


>AE014297-4107|AAN14107.1| 1477|Drosophila melanogaster CG5954-PB,
            isoform B protein.
          Length = 1477

 Score = 33.5 bits (73), Expect = 0.74
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 488  YMMWVLSKGYKADETMVPLLSRISWALCDKLERFLD 523
            Y +W L+  +K D+     L   SW +C+ +ER LD
Sbjct: 1281 YRLWQLNSAFKLDDVRTNPLHWTSWDVCEYIERALD 1316


>AE014297-4106|AAF56691.1| 1477|Drosophila melanogaster CG5954-PA,
            isoform A protein.
          Length = 1477

 Score = 33.5 bits (73), Expect = 0.74
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 488  YMMWVLSKGYKADETMVPLLSRISWALCDKLERFLD 523
            Y +W L+  +K D+     L   SW +C+ +ER LD
Sbjct: 1281 YRLWQLNSAFKLDDVRTNPLHWTSWDVCEYIERALD 1316


>AE014297-1403|AAF54717.4| 1975|Drosophila melanogaster CG6977-PA
            protein.
          Length = 1975

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 7/114 (6%)

Query: 173  VTEQGDGKPQMGTPDDMYSFPAPPEDLDPEIDGTLEYFTIVRSVPRVIQYPKL------I 226
            VT    G P +    D+        D DP+   +  YF +  + PR     K+      +
Sbjct: 1073 VTVSDTGVPALTATADVVVDIINLNDNDPKFSQSDYYFNVTENSPRGTVAGKVEAHDGDV 1132

Query: 227  PTFGALTPQLAQRNRRYIYFIRQAQGEIPLAESSYLTMLKMPDYVLTGITSGKA 280
              FG +T  L   N +Y + I    G + +A SS L   ++ +  L+ +   KA
Sbjct: 1133 GVFGEITYTLIGENNKY-FSIDAYTGNVMVANSSILDREQIKELTLSVVAQDKA 1185


>AF210453-1|AAF21041.1| 4559|Drosophila melanogaster dynein heavy
           chain protein.
          Length = 4559

 Score = 31.1 bits (67), Expect = 3.9
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 4/86 (4%)

Query: 382 GRVGFNDPALTKQLEEAVMMWQNHIDTTIAACLG-KVREGEG---PVAEYKYWRERDAEI 437
           G +   +P +   LE  V+ W + ++  +    G K+   E    P A + +W  R   +
Sbjct: 188 GDISVVNPLMKHSLEFMVVKWLDSVEDLVNIKAGEKIYSKENFPLPEAIFSFWESRLENL 247

Query: 438 SLLVEQLKQPMVVKILTLLEKAGSTY 463
             L EQL    +  I  +LEK  S +
Sbjct: 248 ENLAEQLGDRRIKTIGFVLEKIQSIF 273


>U59923-1|AAC47469.1| 1714|Drosophila melanogaster
            glutamyl-prolyl-tRNA synthetase protein.
          Length = 1714

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 49/228 (21%), Positives = 89/228 (39%), Gaps = 15/228 (6%)

Query: 296  TPENSQSTLSRQLSYAGAHHIMDETASQSTRIFEEPIKSDQQKSTAEEVIADITELVGTV 355
            T E   S   R +  A +HH+    +     ++E+P K+ Q+K   +      T  +G +
Sbjct: 1424 TVEAFISASGRAIQGATSHHLGQNFSKMFEIVYEDPEKTQQKKYVYQNSWGITTRTIGVM 1483

Query: 356  EWTIEHIEGEIHFP-MPDIPALMDEQRGRVGFNDPALTKQLEEAVMMWQNHIDTTIAACL 414
                   +G +  P +  I A++      V   D     QL +A    +  +      C 
Sbjct: 1484 IMVHADNQGLVLPPHVACIQAIVVPCGITVNTKDDE-RAQLLDACKALEKRLVGGGVRCE 1542

Query: 415  GKVREGEGPVAEYKYWRERDAEISLLVEQLKQPMVVKILTLLEKAGSTYLEVIEDESPLQ 474
            G  R+   P  ++ +W  +   + L V     P  +K   L+     T  ++     PL 
Sbjct: 1543 GDYRDNYSPGWKFNHWELKGVPLRLEV----GPKDLKAQQLVAVRRDTGEKI---TIPLA 1595

Query: 475  QVVETLPEMVESIYMMWVLSKGYKADETMVPLLSRI-SWA-LCDKLER 520
             V + +P ++E+I+     S   KA E M     ++ +W   C  LE+
Sbjct: 1596 DVEKKIPALLETIHE----SMLNKAQEDMTSHTKKVTNWTDFCGFLEQ 1639


>M74104-1|AAA28594.1| 1714|Drosophila melanogaster transfer
            RNA-Glu-Pro aminoacylsynthetase protein.
          Length = 1714

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 49/228 (21%), Positives = 89/228 (39%), Gaps = 15/228 (6%)

Query: 296  TPENSQSTLSRQLSYAGAHHIMDETASQSTRIFEEPIKSDQQKSTAEEVIADITELVGTV 355
            T E   S   R +  A +HH+    +     ++E+P K+ Q+K   +      T  +G +
Sbjct: 1424 TVEAFISASGRAIQGATSHHLGQNFSKMFEIVYEDPEKTQQKKYVYQNSWGITTRTIGVM 1483

Query: 356  EWTIEHIEGEIHFP-MPDIPALMDEQRGRVGFNDPALTKQLEEAVMMWQNHIDTTIAACL 414
                   +G +  P +  I A++      V   D     QL +A    +  +      C 
Sbjct: 1484 IMVHADNQGLVLPPHVACIQAIVVPCGITVNTKDDE-RAQLLDACKALEKRLVGGGVRCE 1542

Query: 415  GKVREGEGPVAEYKYWRERDAEISLLVEQLKQPMVVKILTLLEKAGSTYLEVIEDESPLQ 474
            G  R+   P  ++ +W  +   + L V     P  +K   L+     T  ++     PL 
Sbjct: 1543 GDYRDNYSPGWKFNHWELKGVPLRLEV----GPKDLKAQQLVAVRRDTGEKI---TIPLA 1595

Query: 475  QVVETLPEMVESIYMMWVLSKGYKADETMVPLLSRI-SWA-LCDKLER 520
             V + +P ++E+I+     S   KA E M     ++ +W   C  LE+
Sbjct: 1596 DVEKKIPALLETIHE----SMLNKAQEDMTSHTKKVTNWTDFCGFLEQ 1639


>AE014296-2708|AAS64984.1|  330|Drosophila melanogaster CG33257-PA
           protein.
          Length = 330

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 3/87 (3%)

Query: 290 REITVLTPENSQSTLSRQLSYAGAHHIMDETAS-QSTRIFEEPIKSDQQKSTAEEVIADI 348
           RE+  L      + L++Q + A  HHI   TA+  + +   E  +++Q  +     +A  
Sbjct: 165 RELEQLKAAKISARLAQQTAQAAHHHISVLTAAVNNAKSVAE--QAEQTSTEVNNQLASQ 222

Query: 349 TELVGTVEWTIEHIEGEIHFPMPDIPA 375
           +++VG  +  +E +E ++H    D  A
Sbjct: 223 SQMVGQSKNRLEQVEEQLHQARVDYAA 249


>BT021421-1|AAX33569.1| 1098|Drosophila melanogaster LD02690p
           protein.
          Length = 1098

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 243 YIYFIRQAQGEIPLAESSYLTMLKMPDYVLTGITSGKAYIRLFEKQFREITVLTPENSQS 302
           Y + + + + E P  ++  L ML++    L     G+  + LFEK+F  IT  +  NS S
Sbjct: 414 YRWLLLELKREFPFEDA--LRMLEVQWSSLRYRCDGEKELALFEKEFVPITDASVPNSAS 471

Query: 303 TLSRQLS 309
           T S   S
Sbjct: 472 TFSSSYS 478


>AE013599-2039|AAF58149.3| 1098|Drosophila melanogaster CG8155-PA
           protein.
          Length = 1098

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 243 YIYFIRQAQGEIPLAESSYLTMLKMPDYVLTGITSGKAYIRLFEKQFREITVLTPENSQS 302
           Y + + + + E P  ++  L ML++    L     G+  + LFEK+F  IT  +  NS S
Sbjct: 414 YRWLLLELKREFPFEDA--LRMLEVQWSSLRYRCDGEKELALFEKEFVPITDASVPNSAS 471

Query: 303 TLSRQLS 309
           T S   S
Sbjct: 472 TFSSSYS 478


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.318    0.136    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,547,129
Number of Sequences: 52641
Number of extensions: 961924
Number of successful extensions: 2536
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2524
Number of HSP's gapped (non-prelim): 18
length of query: 529
length of database: 24,830,863
effective HSP length: 88
effective length of query: 441
effective length of database: 20,198,455
effective search space: 8907518655
effective search space used: 8907518655
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 64 (29.9 bits)