GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001858-TA|BGIBMGA001858-PA|IPR013594|Dynein heavy chain,
N-terminal region 1
         (529 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79694-8|CAB01965.1|  872|Caenorhabditis elegans Hypothetical pr...    33   0.50 
Z72506-9|CAA96622.1|  872|Caenorhabditis elegans Hypothetical pr...    33   0.50 
Z82285-2|CAD56248.1|  622|Caenorhabditis elegans Hypothetical pr...    33   0.66 
Z82285-1|CAB05302.1|  634|Caenorhabditis elegans Hypothetical pr...    33   0.66 
X08068-1|CAA30857.1|  882|Caenorhabditis elegans paramyosin prot...    32   0.87 
AF357877-1|AAK27715.1|  835|Caenorhabditis elegans receptor-medi...    31   2.7  
AC006695-8|AAF39978.1|  786|Caenorhabditis elegans Receptor medi...    31   2.7  
AC006695-6|AAF39979.1|  835|Caenorhabditis elegans Receptor medi...    31   2.7  
AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily a...    30   3.5  
AF025464-3|AAB71016.3|  949|Caenorhabditis elegans Transporter o...    30   4.6  
Z73102-16|CAA97417.1|  283|Caenorhabditis elegans Hypothetical p...    29   6.1  
AF025469-2|AAG00033.2|  470|Caenorhabditis elegans Taf (tbp-asso...    29   8.1  

>Z79694-8|CAB01965.1|  872|Caenorhabditis elegans Hypothetical
           protein F07A5.7 protein.
          Length = 872

 Score = 33.1 bits (72), Expect = 0.50
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 231 ALTPQLAQRNRRYIYFIRQAQGEIPLAESS-YLTMLKMPDYVLTGITSGKAYI 282
           ++T Q  QR RRY + +  A+G    AESS +L   K    V+TG +S K ++
Sbjct: 815 SVTMQNLQRVRRYQHELEDAEGRADQAESSLHLIRAKHRSSVVTGKSSSKIFV 867


>Z72506-9|CAA96622.1|  872|Caenorhabditis elegans Hypothetical
           protein F07A5.7 protein.
          Length = 872

 Score = 33.1 bits (72), Expect = 0.50
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 231 ALTPQLAQRNRRYIYFIRQAQGEIPLAESS-YLTMLKMPDYVLTGITSGKAYI 282
           ++T Q  QR RRY + +  A+G    AESS +L   K    V+TG +S K ++
Sbjct: 815 SVTMQNLQRVRRYQHELEDAEGRADQAESSLHLIRAKHRSSVVTGKSSSKIFV 867


>Z82285-2|CAD56248.1|  622|Caenorhabditis elegans Hypothetical
           protein T28F3.1b protein.
          Length = 622

 Score = 32.7 bits (71), Expect = 0.66
 Identities = 16/50 (32%), Positives = 25/50 (50%)

Query: 187 DDMYSFPAPPEDLDPEIDGTLEYFTIVRSVPRVIQYPKLIPTFGALTPQL 236
           DD +   +PP + DP +DGT     ++++ P   QYP    T  A  P +
Sbjct: 572 DDPWRRDSPPPEFDPILDGTGRRAPMLQAPPAGFQYPVYADTSIASAPPM 621


>Z82285-1|CAB05302.1|  634|Caenorhabditis elegans Hypothetical
           protein T28F3.1a protein.
          Length = 634

 Score = 32.7 bits (71), Expect = 0.66
 Identities = 16/50 (32%), Positives = 25/50 (50%)

Query: 187 DDMYSFPAPPEDLDPEIDGTLEYFTIVRSVPRVIQYPKLIPTFGALTPQL 236
           DD +   +PP + DP +DGT     ++++ P   QYP    T  A  P +
Sbjct: 584 DDPWRRDSPPPEFDPILDGTGRRAPMLQAPPAGFQYPVYADTSIASAPPM 633


>X08068-1|CAA30857.1|  882|Caenorhabditis elegans paramyosin
           protein.
          Length = 882

 Score = 32.3 bits (70), Expect = 0.87
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 231 ALTPQLAQRNRRYIYFIRQAQGEIPLAESS-YLTMLKMPDYVLTGITSGKAY 281
           ++T Q  QR RRY + +  A+G    AESS +L   K    V+TG +S K +
Sbjct: 831 SVTMQNLQRVRRYQHELEDAEGRADQAESSLHLIRAKHRSSVVTGKSSSKVF 882


>AF357877-1|AAK27715.1|  835|Caenorhabditis elegans
           receptor-mediated endocytosis 1isoform II protein.
          Length = 835

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 15/56 (26%), Positives = 31/56 (55%)

Query: 432 ERDAEISLLVEQLKQPMVVKILTLLEKAGSTYLEVIEDESPLQQVVETLPEMVESI 487
           E+D ++  +VE+ K+P  V + +   +     +   E+ S L++V ET+ E +E +
Sbjct: 141 EKDEDLGRVVEEHKEPAQVPVESETPETSKKEIHQEEEISELEKVPETVEEEIEVV 196


>AC006695-8|AAF39978.1|  786|Caenorhabditis elegans Receptor
           mediated endocytosis protein1, isoform a protein.
          Length = 786

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 15/56 (26%), Positives = 31/56 (55%)

Query: 432 ERDAEISLLVEQLKQPMVVKILTLLEKAGSTYLEVIEDESPLQQVVETLPEMVESI 487
           E+D ++  +VE+ K+P  V + +   +     +   E+ S L++V ET+ E +E +
Sbjct: 92  EKDEDLGRVVEEHKEPAQVPVESETPETSKKEIHQEEEISELEKVPETVEEEIEVV 147


>AC006695-6|AAF39979.1|  835|Caenorhabditis elegans Receptor
           mediated endocytosis protein1, isoform b protein.
          Length = 835

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 15/56 (26%), Positives = 31/56 (55%)

Query: 432 ERDAEISLLVEQLKQPMVVKILTLLEKAGSTYLEVIEDESPLQQVVETLPEMVESI 487
           E+D ++  +VE+ K+P  V + +   +     +   E+ S L++V ET+ E +E +
Sbjct: 141 EKDEDLGRVVEEHKEPAQVPVESETPETSKKEIHQEEEISELEKVPETVEEEIEVV 196


>AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform a protein.
          Length = 996

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 467 IEDESPLQQVVETLPEMVESIYMMWVLSKGYKADETMVPLLSRISWALCDK 517
           + +E  LQQV+  LPE V +  ++++ +       T  PLL R   + C K
Sbjct: 147 MHEEDELQQVLSNLPEHVRNSIVVFITAS--DGSRTFEPLLRRFGLSECPK 195


>AF025464-3|AAB71016.3|  949|Caenorhabditis elegans Transporter of
           sr proteins protein1 protein.
          Length = 949

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 8/87 (9%)

Query: 406 IDTTIAACLGKVREGEGPVAEYKYWRERDAEISLLVEQLKQPMVVKILTLLEKAGSTYLE 465
           ID  I +CL +       + +  Y R  D E+   + ++    V+ +++  EKA     +
Sbjct: 199 IDPIIPSCLHET--ATNCIVQALY-RVEDLEMHRKLAEVVHRGVISLVSAFEKA-----Q 250

Query: 466 VIEDESPLQQVVETLPEMVESIYMMWV 492
            +ED   LQ +     EMVES Y+  V
Sbjct: 251 QVEDFDRLQNIARIFVEMVESFYVQIV 277


>Z73102-16|CAA97417.1|  283|Caenorhabditis elegans Hypothetical
           protein B0035.15 protein.
          Length = 283

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 414 LGKVREGEGPVAEYKYWRERDAEISLLVEQLKQPMVVKILTLLEKAGSTYLE 465
           + K+ +GE  V   KY  E+  E+S   E++K+ + +K  +L+E     Y++
Sbjct: 25  VAKIEKGETKVVPPKYPTEKSREVS---EEIKKELAMKNESLVENMNKMYIK 73


>AF025469-2|AAG00033.2|  470|Caenorhabditis elegans Taf
           (tbp-associated transcriptionfactor) family protein 6.1
           protein.
          Length = 470

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 180 KPQMGTPDDMYSFPAPPEDLDPEIDGTLEYFTIVRSVPRVIQYP 223
           +P  GT   +YSF     D+D + + T  +  I R + RVI YP
Sbjct: 109 QPIQGTSTGIYSFLKSSADVDVDKEDTETFIKIPRDL-RVISYP 151


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.136    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,084,501
Number of Sequences: 27539
Number of extensions: 500333
Number of successful extensions: 1335
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1326
Number of HSP's gapped (non-prelim): 16
length of query: 529
length of database: 12,573,161
effective HSP length: 85
effective length of query: 444
effective length of database: 10,232,346
effective search space: 4543161624
effective search space used: 4543161624
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)