Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001857-TA|BGIBMGA001857-PA|IPR002557|Chitin binding
Peritrophin-A
         (1276 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    36   0.002
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    36   0.002
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    32   0.029
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    27   0.62 
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    27   0.82 
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    27   1.1  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      26   1.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      26   1.4  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    25   3.3  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       24   7.6  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    24   7.6  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    24   7.6  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 35.9 bits (79), Expect = 0.002
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 63   EPGYYADFETNCQVFRVCTVGSTYGFQSFLCPNGTLFNQAVFVCDWWMNVNCRESE 118
            EPG Y     NC  +  C +G     +   C  G  +N+   +CDW  +  C E +
Sbjct: 1104 EPGQYVPDPHNCNAYYRCVLGE---LRKQYCAGGLHWNKERKICDWPKSAKCEEKK 1156



 Score = 26.6 bits (56), Expect = 1.1
 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 4/52 (7%)

Query: 63   EPGYYADFETNCQVFRVCTVGSTYGFQSFLCPNGTLFNQAVFVCDWWMNVNC 114
            + G Y   E+ C  F VC  G         C  G  +N    +CDW   V C
Sbjct: 1208 DSGQYYPHES-CSSFYVCVNGHLVPQN---CAPGLHYNPEEHMCDWKYKVKC 1255


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 35.5 bits (78), Expect = 0.002
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 62  REPGYYADFETN-CQVFRVCTVGSTYGFQSFLCPNGTLFNQAVFVCDW 108
           R+ GY+A  E + C  F  C  G    +    CPNG ++N    +C W
Sbjct: 109 RKHGYFAHEEPHICDKFYYCVDGK---YNMITCPNGLVYNDKAGICSW 153


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 31.9 bits (69), Expect = 0.029
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 71  ETNCQVFRVCTVGSTYGFQSFLCPNGTLFNQAVFVCDWWMNVNCRESEKLLN 122
           ET+C  +  C  G+       LC  G L+N+    CDW  NV+  +   L N
Sbjct: 109 ETSCTRYWTCWNGTA---TEQLCIGGLLYNERTHSCDWPENVDGCQKHPLCN 157


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 27.5 bits (58), Expect = 0.62
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 4/47 (8%)

Query: 66  YYADFETNCQVFRVCTVGSTYGFQSFLCPNGTLFNQAVFVCDWWMNV 112
           Y+ D + +C+++ +C     +      CP+  +FN    VCDW  NV
Sbjct: 924 YHPD-KADCRMYYMCEGERKHHMP---CPSNLVFNPDQNVCDWPENV 966


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 27.1 bits (57), Expect = 0.82
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 4/44 (9%)

Query: 185 PERLPSNVYVPKQNLIQNTYSNNENFYSESTSQPNYPN-QYTTV 227
           P + P+ +Y P  NL   TY    ++Y++  S  +Y N +Y +V
Sbjct: 342 PSQSPNQIYQPVTNLTNLTY---PSYYNQDVSCTHYQNPEYISV 382


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 8/65 (12%)

Query: 235 EIFQRQRQTTPRYSNKLREEPNLRFGNTISNIHAGQFNQLKTKSNDATNTRPQRPTKDIQ 294
           +IFQ  + T PRY+      P    G T+SNI      Q +  S +  NT  Q+   D+ 
Sbjct: 408 DIFQEYKATLPRYTENQLNYP----GITVSNIEV----QSQGSSKNTFNTFWQQSDVDLS 459

Query: 295 KNSQY 299
           +   +
Sbjct: 460 RGMDF 464


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query: 555 PPSNPIPSRQYLSPIIQPPM 574
           PP  P P+ QY  PI+ P M
Sbjct: 162 PPMYPFPAGQYPYPILSPEM 181


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query: 555 PPSNPIPSRQYLSPIIQPPM 574
           PP  P P+ QY  PI+ P M
Sbjct: 54  PPMYPFPAGQYPYPILSPEM 73


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 91  FLCPNGTLFNQAVFVCDWWMNVNCRESEKL 120
           F C  GT+F+    +CDW  + +  + +K+
Sbjct: 502 FACRPGTVFHTQSNICDWPEHADREKCKKI 531


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 2/74 (2%)

Query: 178 NEALLAGPERLPSNVYVPKQNLIQNTYSNNENFYSESTSQPNYPNQYTTVRPSTREAEIF 237
           N+  LA PE L   +      L+ +  +     Y+    +  +PN Y T++   R  ++ 
Sbjct: 118 NDVCLAIPESLVIKLVDYHHQLLGHFGATK--VYNSMKREYYWPNMYRTIKKRLRSCDLC 175

Query: 238 QRQRQTTPRYSNKL 251
           Q+ + +   +   L
Sbjct: 176 QKTKSSNRPHQGPL 189


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 16  AQNGRGLQQHENNRH-GWDIRIAVPGSPGEDYPTLSNIPRTPFSCAGREPG 65
           AQ+ +G+   +NN       R+AVP    +  P LS  P+ P   + + PG
Sbjct: 98  AQHEKGMHDQQNNNPLPSPRRVAVPVLVRDGKPCLSGGPKHPDPGSLQVPG 148


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 14/49 (28%), Positives = 18/49 (36%)

Query: 18  NGRGLQQHENNRHGWDIRIAVPGSPGEDYPTLSNIPRTPFSCAGREPGY 66
           NG G+Q         DI + +P       P L  IP+   S A     Y
Sbjct: 168 NGTGVQLVPTRLANGDIALVLPTQGASPLPLLVPIPQRTASTASSASNY 216


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.311    0.127    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 307,628
Number of Sequences: 317
Number of extensions: 14835
Number of successful extensions: 43
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 32
Number of HSP's gapped (non-prelim): 14
length of query: 1276
length of database: 114,650
effective HSP length: 65
effective length of query: 1211
effective length of database: 94,045
effective search space: 113888495
effective search space used: 113888495
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 49 (23.8 bits)