GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001856-TA|BGIBMGA001856-PA|IPR002018|Carboxylesterase,
type B
         (360 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17...    27   3.1  
SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase Ups1|Schizos...    27   3.1  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    27   4.1  
SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|c...    27   5.4  
SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    27   5.4  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    27   5.4  
SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subu...    26   7.2  
SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subun...    26   7.2  
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    26   9.5  
SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c...    26   9.5  
SPAC29E6.08 |tbp1|tdf1, tbp, SPAC30.12|TATA-binding protein |Sch...    26   9.5  

>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 268

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 181 FEGKIDEYGSKRYQEIRQRI-MDFYFANGTIGERSLRRYAK 220
           FE  I +Y ++ + E+   +  +FYF  G++GE+  +   K
Sbjct: 60  FEKSIYKYNAELWNELSDPLPAEFYFKKGSVGEKDWQERQK 100


>SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase
           Ups1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 251

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 218 YAKYVSDQAIYPVIRQARSHSEKSGNNVYLYRFSYKGCL 256
           + KY  D A  PV+R  R H E+  + +   R +Y G +
Sbjct: 21  FEKYGRDTAFIPVLRHKRVHEEQLRDKLKNVRKTYCGLI 59


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 313 DLKWTPMVDLNNIKGLNLNRKIKMI 337
           DL + P  DLN++K LNL   +K I
Sbjct: 395 DLDFIPSSDLNSLKSLNLQSFVKNI 419


>SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 229 PVIRQARSHSEKSGNNVYLYRFSYKGCLNIVRDLLLR 265
           P +     ++ ++ NN YLY FS    +NI R L LR
Sbjct: 176 PALLPEAPNTREASNNTYLYGFS-NNFINISRTLNLR 211


>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 5/73 (6%)

Query: 33  IVVTVSFRTGIFGYLNTGDGFA----LGNMGAKDMLTAIKWVKSNIKNFKGDVDKITVIG 88
           I+V+   R  +FG+L   +         N G  D    ++W   +I++F G+ + I V G
Sbjct: 136 ILVSPGHRLNLFGFLAGKELLEEDPKSSNFGFWDQRLGLEWTYKHIESFGGNKENIAV-G 194

Query: 89  SGEAAASVATFPL 101
              A +  A F L
Sbjct: 195 GISAGSYSALFQL 207


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 13/45 (28%), Positives = 21/45 (46%)

Query: 120 LSPENYRNYNFEISNKLYWNLNGPFKKLNRTNLYQILANSTTNEL 164
           L P   ++Y +++ + L  NL+   K  N   +YQ   N   N L
Sbjct: 321 LVPSKIQDYFYDVHSLLLKNLSSKIKLCNHILMYQATFNEVKNFL 365


>SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subunit
           Rpn502|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 146 KLNRTNLYQILANS-TTNELLL--ASGALFDSTEYLVPFEGKIDEYGSKRYQEIRQRIMD 202
           KLN   L Q L      NEL+       ++ S     P   + DE G KR+ E+R+R+++
Sbjct: 283 KLNSLPLLQQLVKCFIVNELMRWPKIAEIYGSALRSNPVFAENDEKGEKRWSELRKRVIE 342


>SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subunit
           Rpn501|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 146 KLNRTNLYQILANS-TTNELLL--ASGALFDSTEYLVPFEGKIDEYGSKRYQEIRQRIMD 202
           KLN   L Q L      NEL+       ++ S     P   + DE G KR+ E+R+R+++
Sbjct: 283 KLNSLPLLQQLVKCFIVNELMRWPKIAEIYGSALRSNPVFAENDEKGEKRWSELRKRVIE 342


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 200 IMDFYFANGTIGERSLRRYAKYVSDQAIYPVIRQARSHSEKSGNNVYL 247
           +MDF  ANG+I E+  +   K + +  ++ + +Q  +H +    N+ +
Sbjct: 256 LMDFLIANGSIDEQDCKPLLKQLLETLLH-LHKQGVTHRDIKPENILI 302


>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 320

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%)

Query: 4  TNATGFPVIIWIHERSY----CHGPDFFIDENIIVVTVSFRTGIFGYLN 48
          TN      +IW    SY       P+ F+ ++  ++T+++R+GI G  N
Sbjct: 17 TNTEPPGTLIWFLGHSYKIEDSQWPEKFLYDSFSLITITYRSGIEGLEN 65


>SPAC29E6.08 |tbp1|tdf1, tbp, SPAC30.12|TATA-binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 193 YQEIRQRIMDFYFANGTIGERSLR-RYAKYVSDQAIYPVIRQARSH 237
           Y+ ++ +++   F +G I     + R   Y + +AIYPV+ + R H
Sbjct: 186 YRMVKPKVVLLIFVSGKIVLTGAKVREEIYQAFEAIYPVLSEFRKH 231


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.138    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,717,688
Number of Sequences: 5004
Number of extensions: 74170
Number of successful extensions: 172
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 169
Number of HSP's gapped (non-prelim): 11
length of query: 360
length of database: 2,362,478
effective HSP length: 74
effective length of query: 286
effective length of database: 1,992,182
effective search space: 569764052
effective search space used: 569764052
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)