Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001856-TA|BGIBMGA001856-PA|IPR002018|Carboxylesterase,
type B
(360 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g44630.3 68416.m04798 disease resistance protein RPP1-WsB-lik... 31 1.6
At3g44630.2 68416.m04800 disease resistance protein RPP1-WsB-lik... 31 1.6
At3g44630.1 68416.m04799 disease resistance protein RPP1-WsB-lik... 31 1.6
At2g27680.1 68415.m03354 aldo/keto reductase family protein cont... 31 1.6
At5g41740.1 68418.m05076 disease resistance protein (TIR-NBS-LRR... 29 3.6
At5g33280.1 68418.m03944 chloride channel-like (CLC) protein, pu... 29 4.8
At2g03820.1 68415.m00343 nonsense-mediated mRNA decay NMD3 famil... 29 4.8
At3g25020.1 68416.m03127 disease resistance family protein conta... 29 6.4
At5g51930.1 68418.m06442 glucose-methanol-choline (GMC) oxidored... 28 8.4
At4g22840.1 68417.m03298 bile acid:sodium symporter family prote... 28 8.4
At3g59680.2 68416.m06659 expressed protein 28 8.4
At3g59680.1 68416.m06658 expressed protein 28 8.4
At1g64090.1 68414.m07260 reticulon family protein (RTNLB3) weak ... 28 8.4
>At3g44630.3 68416.m04798 disease resistance protein RPP1-WsB-like
(TIR-NBS-LRR class), putative domain signature
TIR-NBS-LRR exists, suggestive of a disease resistance
protein., closest Col-0 homolog to RPP1-WsB
Length = 1240
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 314 LKWTPMVDLNNIKGLNLNRKIKMIELPEMRRVRFWDQLK 352
+K P ++ NN++GL+L ++++LP + V QLK
Sbjct: 777 VKLPPSINANNLQGLSLTNCSRVVKLPAIENVTNLHQLK 815
>At3g44630.2 68416.m04800 disease resistance protein RPP1-WsB-like
(TIR-NBS-LRR class), putative domain signature
TIR-NBS-LRR exists, suggestive of a disease resistance
protein., closest Col-0 homolog to RPP1-WsB
Length = 1214
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 314 LKWTPMVDLNNIKGLNLNRKIKMIELPEMRRVRFWDQLK 352
+K P ++ NN++GL+L ++++LP + V QLK
Sbjct: 777 VKLPPSINANNLQGLSLTNCSRVVKLPAIENVTNLHQLK 815
>At3g44630.1 68416.m04799 disease resistance protein RPP1-WsB-like
(TIR-NBS-LRR class), putative domain signature
TIR-NBS-LRR exists, suggestive of a disease resistance
protein., closest Col-0 homolog to RPP1-WsB
Length = 1214
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 314 LKWTPMVDLNNIKGLNLNRKIKMIELPEMRRVRFWDQLK 352
+K P ++ NN++GL+L ++++LP + V QLK
Sbjct: 777 VKLPPSINANNLQGLSLTNCSRVVKLPAIENVTNLHQLK 815
>At2g27680.1 68415.m03354 aldo/keto reductase family protein
contains Pfam profile PF00248: oxidoreductase, aldo/keto
reductase family
Length = 384
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 287 ANRLYRSEVSSERRDPTPEGSDEILGDLKWTP----MVDLNNIKGLNLNRKIKMIELPEM 342
A LY ++ RR+ PE ++I G KW P M + ++++RK + +M
Sbjct: 104 AEDLYGIFINRVRRERPPEYLEKIKGLTKWVPPPIKMTSSYVRQNIDISRKRMDVAALDM 163
Query: 343 RRVRFWDQLKSEYFE 357
+ +WD Y +
Sbjct: 164 LQFHWWDYANDGYLD 178
>At5g41740.1 68418.m05076 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1046
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 313 DLKWTPMVDLNNIKGLNLNRKIKMIELPEMRRVRFWDQLKSE 354
+L W + L N+K +NLNR ++ E+P + + ++L E
Sbjct: 602 ELLWGGIEPLPNLKIINLNRSYRLKEIPNLSKATNLERLTLE 643
>At5g33280.1 68418.m03944 chloride channel-like (CLC) protein,
putative similar to CLC-c, At5g49890 [Arabidopsis
thaliana] and chloride channel protein ClC-1 - Nicotiana
tabacum, PIR:T02939
Length = 763
Score = 29.1 bits (62), Expect = 4.8
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 31 NIIVVTVSFRTGIFG-YLNTGDGFA--LGNMGAKDMLTAIKWVKSNIKNFKGDVDKITVI 87
NI V+ S G G ++TG A LG G+K +W++ FK D D+ ++
Sbjct: 174 NISAVSASLLIGKAGPMVHTGACVASILGQGGSKRYRLTWRWLRF----FKNDRDRRDLV 229
Query: 88 GSGEAAASVATFPLTSAAGNLFSRIIVESGSAL 120
G AA A+F G LF+ + S SAL
Sbjct: 230 TCGAAAGIAASF-RAPVGGVLFALEEMSSWSAL 261
>At2g03820.1 68415.m00343 nonsense-mediated mRNA decay NMD3 family
protein contains Pfam profile: PF04981 NMD3 family
Length = 516
Score = 29.1 bits (62), Expect = 4.8
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 192 RYQEIRQRIMDFYFANGTIGERSLRRYAKYVSDQAIYPVIRQARSHSEKSGNNVYLYRFS 251
R Q++ Q I DF+F N + + K V + Y +Q SH KS Y Y +S
Sbjct: 191 RIQQVDQGI-DFFFGNKSHANSFVEFLRKVVPIE--YRQDQQLVSHDVKSSLYNYKYTYS 247
Query: 252 YKGCLNIVRDLLLRNFKLTGATG 274
K C DL+ K+ G
Sbjct: 248 VKICPVCREDLVCLPSKVASGLG 270
>At3g25020.1 68416.m03127 disease resistance family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
esculentum] gi|3894387|gb|AAC78593
Length = 890
Score = 28.7 bits (61), Expect = 6.4
Identities = 30/138 (21%), Positives = 54/138 (39%), Gaps = 4/138 (2%)
Query: 44 FGYLNTGDGFALGNMGAKDMLTAIKWVKSNIKNFKG-DVDKITVIGSGEAAASVATFPLT 102
FG LN + +L + G L + + SN+ D+ K + GS ++ +
Sbjct: 119 FGMLNNLEVLSLSSSG---FLAQVPFSFSNLSMLSALDLSKNELTGSLSFVRNLRKLRVL 175
Query: 103 SAAGNLFSRIIVESGSALSPENYRNYNFEISNKLYWNLNGPFKKLNRTNLYQILANSTTN 162
+ N FS I+ + S + N +N +L F LN+ + + +NS
Sbjct: 176 DVSYNHFSGILNPNSSLFELHHLIYLNLRYNNFTSSSLPYEFGNLNKLEVLDVSSNSFFG 235
Query: 163 ELLLASGALFDSTEYLVP 180
++ L TE +P
Sbjct: 236 QVPPTISNLTQLTELYLP 253
>At5g51930.1 68418.m06442 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 582
Score = 28.3 bits (60), Expect = 8.4
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
Query: 128 YNFEISNKLYWNLNGPFKKLNRTNLYQILANSTTNELLLASGAL 171
+ E L+ + NG F K N LAN TNE++L++GAL
Sbjct: 265 FTTEAYEVLFEDANGVFHKAN-------LANKATNEVILSAGAL 301
>At4g22840.1 68417.m03298 bile acid:sodium symporter family protein
low similarity to SP|Q12908 Ileal sodium/bile acid
cotransporter {Homo sapiens}; contains Pfam profile
PF01758: Sodium Bile acid symporter family
Length = 409
Score = 28.3 bits (60), Expect = 8.4
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 53 FALG-NMGAKDMLTAIKWVKSNIKNFKGDVDKITVIGSGEAAASVATFPLTSAAGNLFSR 111
FA+G N KD L A K K+ + + G V+G A+V+ F L + G
Sbjct: 136 FAVGINSNEKDFLEAFKRPKAILLGYVGQYLVKPVLGFIFGLAAVSLFQLPTPIGAGIML 195
Query: 112 IIVESGSALSPENYRNY 128
+ SG+ LS NY +
Sbjct: 196 VSCVSGAQLS--NYATF 210
>At3g59680.2 68416.m06659 expressed protein
Length = 201
Score = 28.3 bits (60), Expect = 8.4
Identities = 19/63 (30%), Positives = 28/63 (44%)
Query: 111 RIIVESGSALSPENYRNYNFEISNKLYWNLNGPFKKLNRTNLYQILANSTTNELLLASGA 170
R I +S S PEN+R N N N + +L + + ++ ANS T L A
Sbjct: 31 RTIPKSSSQQQPENFRPSRNPSVNSKSSNHNQIYHQLRKCSSLKVAANSFTRVCLCAPIG 90
Query: 171 LFD 173
+D
Sbjct: 91 PYD 93
>At3g59680.1 68416.m06658 expressed protein
Length = 229
Score = 28.3 bits (60), Expect = 8.4
Identities = 19/63 (30%), Positives = 28/63 (44%)
Query: 111 RIIVESGSALSPENYRNYNFEISNKLYWNLNGPFKKLNRTNLYQILANSTTNELLLASGA 170
R I +S S PEN+R N N N + +L + + ++ ANS T L A
Sbjct: 59 RTIPKSSSQQQPENFRPSRNPSVNSKSSNHNQIYHQLRKCSSLKVAANSFTRVCLCAPIG 118
Query: 171 LFD 173
+D
Sbjct: 119 PYD 121
>At1g64090.1 68414.m07260 reticulon family protein (RTNLB3) weak
similarity to SP|O95197 Reticulon protein 3
(Neuroendocrine-specific protein-like) {Homo sapiens};
contains Pfam profile PF02453: Reticulon
Length = 255
Score = 28.3 bits (60), Expect = 8.4
Identities = 11/40 (27%), Positives = 24/40 (60%)
Query: 164 LLLASGALFDSTEYLVPFEGKIDEYGSKRYQEIRQRIMDF 203
+ +A+ LF +E K+D++G K +EI+++ ++F
Sbjct: 192 IYIATVLLFTIPVLYEKYEDKVDDFGEKAMREIKKQYVEF 231
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.320 0.138 0.411
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,780,876
Number of Sequences: 28952
Number of extensions: 382575
Number of successful extensions: 916
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 906
Number of HSP's gapped (non-prelim): 16
length of query: 360
length of database: 12,070,560
effective HSP length: 82
effective length of query: 278
effective length of database: 9,696,496
effective search space: 2695625888
effective search space used: 2695625888
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)
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