GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001855-TA|BGIBMGA001855-PA|IPR012581|NUC156
         (158 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.06c |swi1||replication fork protection complex subunit S...    30   0.19 
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe...    27   1.8  
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    26   3.1  
SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr 2...    26   3.1  
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p...    25   7.1  

>SPBC216.06c |swi1||replication fork protection complex subunit
           Swi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 971

 Score = 29.9 bits (64), Expect = 0.19
 Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 5/83 (6%)

Query: 40  KVINGKIVALCKLTTVDKGKMFTLGDKAIPCLGN--GLVRCVDFEKQVLYIITPLPVGIL 97
           +VI G + A+      D  K++ LGD+A+ CL +    ++ VD EK  ++ I  L   + 
Sbjct: 5   EVIQGIVSAIGGFDYSDDEKVYVLGDEALACLKDLKRYLQVVD-EKYKVWQIRSLLSSLQ 63

Query: 98  SQVNTL--VYSDWAPEIVGQEKY 118
              N +  + SDW  +I     +
Sbjct: 64  LVTNDICPILSDWDKDITNYRNW 86


>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 9/21 (42%), Positives = 16/21 (76%)

Query: 43  NGKIVALCKLTTVDKGKMFTL 63
           +G++V+LC+LT  + GK F +
Sbjct: 121 DGRVVSLCELTNPETGKRFEI 141


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 78  CVDFEKQVLYIITPLP-VGILSQVNTLV-YS-DWAPEIVGQEKYLPDNIIVPYRITS 131
           C D    +++  T  P + I   V T++ +S + +PE++G  KYL   I  P R+ S
Sbjct: 363 CHDMAANIVHFDTTYPNIKITHTVRTVLRFSCENSPELMGSAKYLEIYIDSPVRLLS 419


>SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 74  GLVRCV-DFEKQVLYIITPLPVGILSQVNTLVYSDWAPEIV 113
           G   C+ DF K+V+  +TP   G +S + TL  S +A  IV
Sbjct: 72  GAYFCIYDFSKRVVMSMTPFNNGEISVLQTLCSSGFAGCIV 112


>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
           protein 1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 567

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)

Query: 129 ITSQQKQKQLMITPRRRFNPLVLLNMSRKT 158
           I + QKQKQLM +P R  +PL    +S  T
Sbjct: 4   IITPQKQKQLMSSPSR--DPLSTTELSTPT 31


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.141    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 718,151
Number of Sequences: 5004
Number of extensions: 28321
Number of successful extensions: 41
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 38
Number of HSP's gapped (non-prelim): 5
length of query: 158
length of database: 2,362,478
effective HSP length: 67
effective length of query: 91
effective length of database: 2,027,210
effective search space: 184476110
effective search space used: 184476110
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 50 (24.2 bits)