GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001855-TA|BGIBMGA001855-PA|IPR012581|NUC156
         (158 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0598 + 4443768-4443949,4444053-4444150,4444275-4444308,444...    45   3e-05
01_06_0571 - 30333569-30334013,30334149-30334198,30334568-30334852     31   0.33 
01_03_0248 + 14235808-14235989,14236538-14236635,14237171-142372...    31   0.43 
05_06_0273 - 26851077-26851167,26851433-26851869,26852125-268522...    29   2.3  
07_03_0265 + 15976331-15976645,15977575-15977784,15977869-159779...    28   4.0  
03_03_0279 - 16134422-16134608,16134703-16134947,16135046-161353...    27   9.3  

>01_01_0598 +
           4443768-4443949,4444053-4444150,4444275-4444308,
           4444629-4444780,4444871-4445051,4445707-4445887,
           4446034-4446142,4446324-4446451,4446758-4446832
          Length = 379

 Score = 44.8 bits (101), Expect = 3e-05
 Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 9/82 (10%)

Query: 25  LCIGLNVRVPEDTVTKVINGKIVALC-KLTTVDKGKMFTLGDKAIP-CLGNGLVRCVDFE 82
           + I L+ +VP   V   +N  IV L     T++ G+       +IP C G G++R +D +
Sbjct: 269 MVIHLHCQVPPSEVWHSLNATIVGLAISCGTIEAGR-------SIPWCAGLGIIRGIDVQ 321

Query: 83  KQVLYIITPLPVGILSQVNTLV 104
           + +LY+ITP+P+  L +V+ L+
Sbjct: 322 RGILYVITPVPLEHLQRVDLLL 343


>01_06_0571 - 30333569-30334013,30334149-30334198,30334568-30334852
          Length = 259

 Score = 31.5 bits (68), Expect = 0.33
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 93  PVGILSQVNTLVYSDWAPEIVGQEKYLPDNIIVPYRITSQQKQKQLMITPRRRFNPLVL 151
           P G      TL  +      VG   ++P ++IV +R   ++K   +++ P+ R   +V+
Sbjct: 199 PAGFSKFGQTLAGAGGGSFFVGSHVFVPPHVIVDHRRAKREKAMMMLVVPKGRARKMVM 257


>01_03_0248 +
           14235808-14235989,14236538-14236635,14237171-14237204,
           14237731-14237900,14238060-14238240,14238288-14238498,
           14239122-14239233,14239360-14239487,14240201-14240263
          Length = 392

 Score = 31.1 bits (67), Expect = 0.43
 Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 5/92 (5%)

Query: 18  FRVELKNL-CIGLNVRVPEDTVTKVINGKIVALCKLTTVDKGKMFTLGDKAIPCLGNGLV 76
           F++ L  L  I L+ +V + TV   + G IV +    +V      +       C+G G +
Sbjct: 277 FQLPLSKLQVIDLHSQVSDYTVHHFLKGTIVGIATSASVALSNQCSTPC----CIGLGFI 332

Query: 77  RCVDFEKQVLYIITPLPVGILSQVNTLVYSDW 108
           + +D  +  +++ITP+   +L   +    S +
Sbjct: 333 KAIDVSRDCIHLITPVSRQLLENADIFFCSSF 364


>05_06_0273 -
           26851077-26851167,26851433-26851869,26852125-26852271,
           26852352-26854415,26854792-26854908,26855007-26855093,
           26855350-26855439,26855523-26855609,26856736-26856810
          Length = 1064

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 54  TVDKGKMFTLGDKAIPCLGNGLVRCVDFEKQV 85
           T+  GK+FT GD     LG+G    V + K+V
Sbjct: 397 TMSSGKLFTFGDGTFGSLGHGDRESVAYPKEV 428


>07_03_0265 +
           15976331-15976645,15977575-15977784,15977869-15977916,
           15978307-15978675,15978736-15978747,15978763-15978870,
           15979156-15979493,15980313-15980430,15983247-15984107,
           15984457-15984750
          Length = 890

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/45 (31%), Positives = 24/45 (53%)

Query: 32  RVPEDTVTKVINGKIVALCKLTTVDKGKMFTLGDKAIPCLGNGLV 76
           RVP  ++++V+N            + G++FT GD +  C G+G V
Sbjct: 148 RVPFPSLSRVVNISASHNHAAFVTELGEVFTCGDNSSLCCGHGEV 192


>03_03_0279 -
           16134422-16134608,16134703-16134947,16135046-16135364,
           16135451-16135675,16135780-16135946,16136030-16136146,
           16136234-16136407,16136489-16136584,16136669-16136885,
           16137005-16137123,16137249-16137441,16137562-16137713,
           16137809-16137938,16138667-16138776
          Length = 816

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 85  VLYIITPLPVGILSQVNTLVYSDWAPEIVGQEKYLPDNI-IVPYRITSQQKQKQLMITPR 143
           V  ++   P G  +Q N L Y    P+  GQ  Y+ D +  +   +  + KQ+ L ITPR
Sbjct: 281 VFNVVIMSPHGYFAQANVLGY----PDTGGQVVYILDQVRAMENEMLLRIKQQGLNITPR 336


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.324    0.141    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,356,162
Number of Sequences: 37544
Number of extensions: 167636
Number of successful extensions: 274
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 270
Number of HSP's gapped (non-prelim): 6
length of query: 158
length of database: 14,793,348
effective HSP length: 76
effective length of query: 82
effective length of database: 11,940,004
effective search space: 979080328
effective search space used: 979080328
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 56 (26.6 bits)