GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001855-TA|BGIBMGA001855-PA|IPR012581|NUC156
         (158 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25297| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   3e-04
SB_817| Best HMM Match : Peptidase_S28 (HMM E-Value=0)                 29   1.3  
SB_59769| Best HMM Match : Lectin_C (HMM E-Value=0.42)                 27   5.4  
SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_15380| Best HMM Match : RA (HMM E-Value=0.11)                       27   7.1  
SB_45585| Best HMM Match : Swi3 (HMM E-Value=0.37)                     27   9.4  
SB_2033| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  
SB_45073| Best HMM Match : ERM (HMM E-Value=0)                         27   9.4  
SB_27837| Best HMM Match : Vicilin_N (HMM E-Value=0.85)                27   9.4  
SB_24261| Best HMM Match : Band_41 (HMM E-Value=3.4e-09)               27   9.4  

>SB_25297| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 482

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 17/38 (44%), Positives = 28/38 (73%)

Query: 67  AIPCLGNGLVRCVDFEKQVLYIITPLPVGILSQVNTLV 104
           ++ CLG G+VR VD   ++ YI+TP+P+ +L +VN L+
Sbjct: 235 SLECLGLGIVRNVDPVNKLFYILTPVPLDVLKRVNILL 272


>SB_817| Best HMM Match : Peptidase_S28 (HMM E-Value=0)
          Length = 826

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 32  RVPEDTVTKVINGKIVALCKLTTVDKGKMFTLGDKAIPCLG 72
           R+  D +T VI GK    C+      G +  +GDKA PC G
Sbjct: 774 RIVADDITGVIGGKAPP-CQGKVEAVGSVGVIGDKAPPCQG 813


>SB_59769| Best HMM Match : Lectin_C (HMM E-Value=0.42)
          Length = 218

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 9/28 (32%), Positives = 21/28 (75%)

Query: 115 QEKYLPDNIIVPYRITSQQKQKQLMITP 142
           + K+L D +++P R +S+ KQ+++++ P
Sbjct: 121 ENKFLVDTMVLPSRKSSKAKQEKIIMNP 148


>SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1937

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)

Query: 72   GNGLVRCVDFEK-QVLYIITPL--PVGILSQVNTLVYSDW 108
            G   +RCVD     V  +I P+  P GI S   TL ++DW
Sbjct: 1592 GTWSIRCVDLGALNVRKVIYPIAYPYGIASFNRTLFWTDW 1631


>SB_15380| Best HMM Match : RA (HMM E-Value=0.11)
          Length = 2124

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 34  PEDTVTKVINGKIVALCKLTTVDKGKMFTLGDKAIPCLGNGLVRCVDFEKQVLYIITP 91
           P+  +++VI GK+  LC+L  +D+   F++   A    G  L++    E +V Y  TP
Sbjct: 560 PKYGLSQVIKGKVNVLCQLADLDQITKFSISFHA---EGKRLLKVSVNESKVRYGKTP 614


>SB_45585| Best HMM Match : Swi3 (HMM E-Value=0.37)
          Length = 341

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 5/46 (10%)

Query: 105 YSDWAPEIVGQEKYLPDNIIVPY-----RITSQQKQKQLMITPRRR 145
           YSD++ E    +K + +  + P+     R T++Q++KQ+ I  +RR
Sbjct: 100 YSDFSSESKSSKKEVYEKALSPWEEWLVRKTAEQREKQMRIREKRR 145


>SB_2033| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 995

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 32  RVPEDTVTKVINGKIVALCKLTTVDKGKMFTLGDKAIPCLGNGLVRC 78
           R+  +T  K I GK     K  T+DKG   TL  K+I     G  +C
Sbjct: 55  RMDGETENK-ITGKNFLTDKFYTIDKGDKHTLVIKSIEVKDGGYYKC 100


>SB_45073| Best HMM Match : ERM (HMM E-Value=0)
          Length = 504

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 11/51 (21%), Positives = 27/51 (52%)

Query: 90  TPLPVGILSQVNTLVYSDWAPEIVGQEKYLPDNIIVPYRITSQQKQKQLMI 140
           T L    + Q     Y+D +  ++  EK LPD ++  + ++ +Q  +++++
Sbjct: 62  TVLLASYMCQAKHGEYTDESAALIKDEKLLPDRVLDQHTLSKEQWDERIIL 112


>SB_27837| Best HMM Match : Vicilin_N (HMM E-Value=0.85)
          Length = 206

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 5/46 (10%)

Query: 105 YSDWAPEIVGQEKYLPDNIIVPY-----RITSQQKQKQLMITPRRR 145
           YSD++ E    +K + +  + P+     R T++Q++KQ+ I  +RR
Sbjct: 100 YSDFSSESKSSKKEVYEKALSPWEEWLVRKTAEQREKQMRIREKRR 145


>SB_24261| Best HMM Match : Band_41 (HMM E-Value=3.4e-09)
          Length = 118

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 11/51 (21%), Positives = 27/51 (52%)

Query: 90  TPLPVGILSQVNTLVYSDWAPEIVGQEKYLPDNIIVPYRITSQQKQKQLMI 140
           T L    + Q     Y+D +  ++  EK LPD ++  + ++ +Q  +++++
Sbjct: 58  TVLLASYMCQAKHGEYTDESAALIKDEKLLPDRVLDQHTLSKEQWDERIIL 108


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.324    0.141    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,220,233
Number of Sequences: 59808
Number of extensions: 197623
Number of successful extensions: 361
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 357
Number of HSP's gapped (non-prelim): 10
length of query: 158
length of database: 16,821,457
effective HSP length: 77
effective length of query: 81
effective length of database: 12,216,241
effective search space: 989515521
effective search space used: 989515521
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 56 (26.6 bits)