GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001855-TA|BGIBMGA001855-PA|IPR012581|NUC156
         (158 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070613-1|AAL48084.1|  995|Drosophila melanogaster RE71565p pro...    38   0.006
AE013599-2173|AAF58067.2|  995|Drosophila melanogaster CG8414-PA...    38   0.006
AY069495-1|AAL39640.1|  923|Drosophila melanogaster LD22235p pro...    33   0.24 
AJ556817-1|CAD89222.1| 1177|Drosophila melanogaster SMG5 protein...    33   0.24 
AE014134-2425|AAF53352.1| 1177|Drosophila melanogaster CG8954-PB...    33   0.24 
AE014134-2424|AAF53351.1| 1177|Drosophila melanogaster CG8954-PA...    33   0.24 
U92536-1|AAD41441.1| 1487|Drosophila melanogaster RECQ helicase ...    28   6.7  

>AY070613-1|AAL48084.1|  995|Drosophila melanogaster RE71565p
           protein.
          Length = 995

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 14/35 (40%), Positives = 26/35 (74%)

Query: 70  CLGNGLVRCVDFEKQVLYIITPLPVGILSQVNTLV 104
           CLG G+VR +D+E++ LY++  +P+  +S V+ L+
Sbjct: 904 CLGIGVVRAIDYERKELYLVPAMPLQKMSLVDCLI 938


>AE013599-2173|AAF58067.2|  995|Drosophila melanogaster CG8414-PA
           protein.
          Length = 995

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 14/35 (40%), Positives = 26/35 (74%)

Query: 70  CLGNGLVRCVDFEKQVLYIITPLPVGILSQVNTLV 104
           CLG G+VR +D+E++ LY++  +P+  +S V+ L+
Sbjct: 904 CLGIGVVRAIDYERKELYLVPAMPLQKMSLVDCLI 938


>AY069495-1|AAL39640.1|  923|Drosophila melanogaster LD22235p
           protein.
          Length = 923

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 17  CFRVELKNLCIGLNVRVPEDTVTKVINGKIVALCKLTTVDKGKMFTLGDKAIPCLGNGLV 76
           C  ++L+ +     +RVPE ++ K+++     L KL  ++  K+++L    +    + + 
Sbjct: 92  CVLIDLRKILCSQQLRVPEPSIFKIVSILFFCLSKLKMINSPKVYSLHAFLVAACSDLMD 151

Query: 77  RC-VDFEKQVL 86
            C V  E+ +L
Sbjct: 152 ACIVSIEQTIL 162


>AJ556817-1|CAD89222.1| 1177|Drosophila melanogaster SMG5 protein
           protein.
          Length = 1177

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 17  CFRVELKNLCIGLNVRVPEDTVTKVINGKIVALCKLTTVDKGKMFTLGDKAIPCLGNGLV 76
           C  ++L+ +     +RVPE ++ K+++     L KL  ++  K+++L    +    + + 
Sbjct: 346 CVLIDLRKILCSQQLRVPEPSIFKIVSILFFCLSKLKMINSPKVYSLHAFLVAACSDLMD 405

Query: 77  RC-VDFEKQVL 86
            C V  E+ +L
Sbjct: 406 ACIVSIEQTIL 416


>AE014134-2425|AAF53352.1| 1177|Drosophila melanogaster CG8954-PB,
           isoform B protein.
          Length = 1177

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 17  CFRVELKNLCIGLNVRVPEDTVTKVINGKIVALCKLTTVDKGKMFTLGDKAIPCLGNGLV 76
           C  ++L+ +     +RVPE ++ K+++     L KL  ++  K+++L    +    + + 
Sbjct: 346 CVLIDLRKILCSQQLRVPEPSIFKIVSILFFCLSKLKMINSPKVYSLHAFLVAACSDLMD 405

Query: 77  RC-VDFEKQVL 86
            C V  E+ +L
Sbjct: 406 ACIVSIEQTIL 416


>AE014134-2424|AAF53351.1| 1177|Drosophila melanogaster CG8954-PA,
           isoform A protein.
          Length = 1177

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 17  CFRVELKNLCIGLNVRVPEDTVTKVINGKIVALCKLTTVDKGKMFTLGDKAIPCLGNGLV 76
           C  ++L+ +     +RVPE ++ K+++     L KL  ++  K+++L    +    + + 
Sbjct: 346 CVLIDLRKILCSQQLRVPEPSIFKIVSILFFCLSKLKMINSPKVYSLHAFLVAACSDLMD 405

Query: 77  RC-VDFEKQVL 86
            C V  E+ +L
Sbjct: 406 ACIVSIEQTIL 416


>U92536-1|AAD41441.1| 1487|Drosophila melanogaster RECQ helicase
           homolog protein.
          Length = 1487

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 85  VLYIITPLPVGILSQVNTLVYSDWAPEIVGQEKYLPDNIIVPYRITSQQKQ-KQLMITPR 143
           V  +I+PL   I  Q+N L   D   E +  E+ + D + +   + SQ    K L +TP 
Sbjct: 779 VTIVISPLKSLIFDQINKLASLDICAESLSGEQKMADVMAIYRDLESQPPMVKLLYVTPE 838

Query: 144 R 144
           +
Sbjct: 839 K 839


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.324    0.141    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,692,706
Number of Sequences: 52641
Number of extensions: 323015
Number of successful extensions: 629
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 623
Number of HSP's gapped (non-prelim): 7
length of query: 158
length of database: 24,830,863
effective HSP length: 79
effective length of query: 79
effective length of database: 20,672,224
effective search space: 1633105696
effective search space used: 1633105696
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 58 (27.5 bits)