GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001855-TA|BGIBMGA001855-PA|IPR012581|NUC156
         (158 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83114-1|CAB63234.1|  549|Caenorhabditis elegans Hypothetical pr...    40   8e-04
AF229855-1|AAF71303.1| 1497|Caenorhabditis elegans dual oxidase ...    27   8.2  
AF100661-4|AAC68973.1|  481|Caenorhabditis elegans Hypothetical ...    27   8.2  
AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trn...    27   8.2  
AF077541-8|AAK68426.1|  908|Caenorhabditis elegans Cysteinyl trn...    27   8.2  
AF043697-1|AAK73882.1| 1497|Caenorhabditis elegans Blistered cut...    27   8.2  

>Z83114-1|CAB63234.1|  549|Caenorhabditis elegans Hypothetical
           protein K09B11.2 protein.
          Length = 549

 Score = 39.9 bits (89), Expect = 8e-04
 Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 12/98 (12%)

Query: 19  RVELKNLCIGLNVRVPEDTVTKVINGKIVALC-KLTTVDKGKMFTLGD-----------K 66
           R E   +C+ +++ V +  V   IN +I+ALC   T +   K++   D            
Sbjct: 397 RFENVTICVPVDLLVEDSHVFSSINTQIMALCINNTDLKPRKLYGKDDLPSICVIDGNSP 456

Query: 67  AIPCLGNGLVRCVDFEKQVLYIITPLPVGILSQVNTLV 104
           A+ C+G G++R V  E+++++++TP+ +  L +   LV
Sbjct: 457 ALQCIGFGIIRGVSVEERIIFVVTPVDLLKLEEPPVLV 494


>AF229855-1|AAF71303.1| 1497|Caenorhabditis elegans dual oxidase
            protein.
          Length = 1497

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 17/64 (26%), Positives = 31/64 (48%)

Query: 73   NGLVRCVDFEKQVLYIITPLPVGILSQVNTLVYSDWAPEIVGQEKYLPDNIIVPYRITSQ 132
            +GL + +D  K   Y++ P+ + ++ ++  L+      EIV  E    D I + YR   +
Sbjct: 1179 HGLPKLLDSPKFGYYVVGPIVLFVIDRIIGLMQYYKKLEIVNAEILPSDIIYIEYRRPRE 1238

Query: 133  QKQK 136
             K K
Sbjct: 1239 FKYK 1242


>AF100661-4|AAC68973.1|  481|Caenorhabditis elegans Hypothetical
           protein H20E11.1a protein.
          Length = 481

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/43 (25%), Positives = 21/43 (48%)

Query: 111 EIVGQEKYLPDNIIVPYRITSQQKQKQLMITPRRRFNPLVLLN 153
           ++ G    +PDN +VP  +++       +  P+  F  + LLN
Sbjct: 34  QVAGNAINIPDNSVVPVALSANFNCSYTIKPPKNTFAKITLLN 76


>AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trna
          synthetase protein1, isoform a protein.
          Length = 909

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 5  RQNNYEKSRFFSCFRVELKNLCIGLNVR 32
          +  N++K  FF C  + LK   I LNV+
Sbjct: 14 KNRNFKKKPFFGCGFLNLKRFLICLNVK 41


>AF077541-8|AAK68426.1|  908|Caenorhabditis elegans Cysteinyl trna
          synthetase protein1, isoform b protein.
          Length = 908

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 5  RQNNYEKSRFFSCFRVELKNLCIGLNVR 32
          +  N++K  FF C  + LK   I LNV+
Sbjct: 14 KNRNFKKKPFFGCGFLNLKRFLICLNVK 41


>AF043697-1|AAK73882.1| 1497|Caenorhabditis elegans Blistered cuticle
            protein 3 protein.
          Length = 1497

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 17/64 (26%), Positives = 31/64 (48%)

Query: 73   NGLVRCVDFEKQVLYIITPLPVGILSQVNTLVYSDWAPEIVGQEKYLPDNIIVPYRITSQ 132
            +GL + +D  K   Y++ P+ + ++ ++  L+      EIV  E    D I + YR   +
Sbjct: 1179 HGLPKLLDSPKFGYYVVGPIVLFVIDRIIGLMQYYKKLEIVNAEILPSDIIYIEYRRPRE 1238

Query: 133  QKQK 136
             K K
Sbjct: 1239 FKYK 1242


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.324    0.141    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,898,836
Number of Sequences: 27539
Number of extensions: 155936
Number of successful extensions: 269
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 262
Number of HSP's gapped (non-prelim): 6
length of query: 158
length of database: 12,573,161
effective HSP length: 76
effective length of query: 82
effective length of database: 10,480,197
effective search space: 859376154
effective search space used: 859376154
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 56 (26.6 bits)