GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001855-TA|BGIBMGA001855-PA|IPR012581|NUC156
         (158 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   2.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   2.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   3.3  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    21   4.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   5.8  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    21   7.7  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    21   7.7  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    21   7.7  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    21   7.7  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    21   7.7  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 12/45 (26%), Positives = 20/45 (44%)

Query: 23  KNLCIGLNVRVPEDTVTKVINGKIVALCKLTTVDKGKMFTLGDKA 67
           +N+CI   V+VP     ++ +  I  L K        +FT  + A
Sbjct: 165 RNVCIAAAVKVPSAADDRMFDDIIQRLSKKANARAVVLFTRAEDA 209


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 12/45 (26%), Positives = 20/45 (44%)

Query: 23  KNLCIGLNVRVPEDTVTKVINGKIVALCKLTTVDKGKMFTLGDKA 67
           +N+CI   V+VP     ++ +  I  L K        +FT  + A
Sbjct: 255 RNVCIAAAVKVPSAADDRMFDDIIQRLSKKANARAVVLFTRAEDA 299


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 126 PYRITSQQKQKQLMITPRRRFNP 148
           PY+   QQ+Q+Q      RR  P
Sbjct: 162 PYQQQQQQQQRQQQRQEERRLRP 184


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)

Query: 37  TVTKVINGKIVALCKLTTVD 56
           + TK+I+G +VA+ + T  D
Sbjct: 129 STTKIIDGHVVAINETTYTD 148


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query: 111 EIVGQEKYLPDNIIVPYRIT 130
           E V   KYLP  +IVP  +T
Sbjct: 20  EKVRGPKYLPLTLIVPITLT 39


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 7/20 (35%), Positives = 13/20 (65%)

Query: 2   IPNRQNNYEKSRFFSCFRVE 21
           I N  NNY+K ++++   +E
Sbjct: 90  IHNNNNNYKKLQYYNINYIE 109


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 7/20 (35%), Positives = 13/20 (65%)

Query: 2   IPNRQNNYEKSRFFSCFRVE 21
           I N  NNY+K ++++   +E
Sbjct: 90  IHNNNNNYKKLQYYNINYIE 109


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 7/20 (35%), Positives = 13/20 (65%)

Query: 2   IPNRQNNYEKSRFFSCFRVE 21
           I N  NNY+K ++++   +E
Sbjct: 90  IHNNNNNYKKLQYYNINYIE 109


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 7/20 (35%), Positives = 13/20 (65%)

Query: 2   IPNRQNNYEKSRFFSCFRVE 21
           I N  NNY+K ++++   +E
Sbjct: 90  IHNNNNNYKKLQYYNINYIE 109


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 7/20 (35%), Positives = 13/20 (65%)

Query: 2   IPNRQNNYEKSRFFSCFRVE 21
           I N  NNY+K ++++   +E
Sbjct: 323 IHNNNNNYKKLQYYNINYIE 342


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.141    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,093
Number of Sequences: 429
Number of extensions: 2022
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 158
length of database: 140,377
effective HSP length: 53
effective length of query: 105
effective length of database: 117,640
effective search space: 12352200
effective search space used: 12352200
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 41 (20.6 bits)