GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001855-TA|BGIBMGA001855-PA|IPR012581|NUC156
         (158 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11010.3 68418.m01286 pre-mRNA cleavage complex-related low s...    43   1e-04
At5g11010.2 68418.m01285 pre-mRNA cleavage complex-related low s...    43   1e-04
At3g23270.1 68416.m02933 regulator of chromosome condensation (R...    29   1.5  
At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR...    29   1.9  
At1g74450.1 68414.m08625 expressed protein                             28   3.4  
At4g19006.1 68417.m02801 26S proteasome regulatory subunit, puta...    27   4.5  
At1g69340.1 68414.m07956 appr-1-p processing enzyme family prote...    27   4.5  
At5g61440.1 68418.m07709 thioredoxin family protein low similari...    27   5.9  
At2g24650.1 68415.m02944 transcriptional factor B3 family protei...    27   5.9  
At5g49000.1 68418.m06062 kelch repeat-containing F-box family pr...    27   7.8  

>At5g11010.3 68418.m01286 pre-mRNA cleavage complex-related low
           similarity to SP|Q92989 Pre-mRNA cleavage complex II
           protein Clp1 {Homo sapiens}
          Length = 368

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 11/89 (12%)

Query: 18  FRVELKNLCIG-LNVRVPEDTVTKVINGKIVALCKLTTVDKGKMFTLGDKAIP-CLGNGL 75
           + V + +L I  L+ ++P   V   +N  IV L   T V +          +P C+G G+
Sbjct: 260 YEVPISSLTINHLHCQIPSSEVYYSLNASIVGLGISTEVFED---------LPSCVGLGI 310

Query: 76  VRCVDFEKQVLYIITPLPVGILSQVNTLV 104
           VR +D E+ +LY+ITP+P  ++ +V+ L+
Sbjct: 311 VRGIDTERGILYVITPVPENLVEKVDLLL 339


>At5g11010.2 68418.m01285 pre-mRNA cleavage complex-related low
           similarity to SP|Q92989 Pre-mRNA cleavage complex II
           protein Clp1 {Homo sapiens}
          Length = 368

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 11/89 (12%)

Query: 18  FRVELKNLCIG-LNVRVPEDTVTKVINGKIVALCKLTTVDKGKMFTLGDKAIP-CLGNGL 75
           + V + +L I  L+ ++P   V   +N  IV L   T V +          +P C+G G+
Sbjct: 260 YEVPISSLTINHLHCQIPSSEVYYSLNASIVGLGISTEVFED---------LPSCVGLGI 310

Query: 76  VRCVDFEKQVLYIITPLPVGILSQVNTLV 104
           VR +D E+ +LY+ITP+P  ++ +V+ L+
Sbjct: 311 VRGIDTERGILYVITPVPENLVEKVDLLL 339


>At3g23270.1 68416.m02933 regulator of chromosome condensation
           (RCC1) family protein contains Pfam domain PF00415:
           Regulator of chromosome condensation (RCC1); similar to
           zinc finger protein (GI:15811367) [Arabidopsis
           thaliana]; similar to chromosome condensation regulator
           protein (GI:22770461) [Cicer arietinum]
          Length = 1045

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 58  GKMFTLGDKAIPCLGNGLVRCVDFEKQV 85
           GK+FT GD A   LG+G    V + K+V
Sbjct: 377 GKLFTFGDGAFGVLGHGNRESVSYPKEV 404


>At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR
            class), putative similar to zinc finger protein
            (GI:15811367) [Arabidopsis thaliana]; similar to
            TIR-NBS-LRR (GI:27466164) [Arabidopsis thaliana]; similar
            to disease resistance protein RPP1-WsB (GI:3860165)
            [Arabidopsis thaliana]
          Length = 1996

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 58   GKMFTLGDKAIPCLGNGLVRCVDFEKQV 85
            GK+FT GD A   LG+G    V + K+V
Sbjct: 1328 GKLFTFGDGAFGVLGHGDRESVSYPKEV 1355


>At1g74450.1 68414.m08625 expressed protein
          Length = 397

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 27  IGLNVRVPEDTVTKVINGKIVALCKLTTVDKGKMFTLGDKAIPCLGNGL 75
           IG N+  P  +     NG IV +  +TTV    M+ L   AIPC   GL
Sbjct: 229 IGNNLATPRASDITATNGLIVPVYTMTTVLLFVMWAL-VAAIPCQDRGL 276


>At4g19006.1 68417.m02801 26S proteasome regulatory subunit,
           putative (RPN9) similar to 26S proteasome subunit p40.5
           [Homo sapiens] gi|3618343|dbj|BAA33214
          Length = 386

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 3/32 (9%)

Query: 95  GILSQVNTLVYSDWA-PEIVG--QEKYLPDNI 123
           GIL QVN  VY  WA P ++G  Q K L D +
Sbjct: 331 GILDQVNGTVYVSWAQPRVLGIPQIKSLRDQL 362


>At1g69340.1 68414.m07956 appr-1-p processing enzyme family protein
           contains Pfam domain PF01661: Appr-1-p processing enzyme
           family
          Length = 562

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 49  LCKLTTVDKGKMFTLGDKAIPCLG-NGLVRCVDFEKQVLYII 89
           + ++  V +G + T G   +  +G + L+RC+D E+ VLY+I
Sbjct: 394 IAEMKIVYRGGVDTEGHPVMVVVGAHFLLRCLDLERFVLYVI 435


>At5g61440.1 68418.m07709 thioredoxin family protein low similarity
           to thioredoxin [Callithrix jacchus] GI:13560979;
           contains Pfam profile: PF00085 Thioredoxin
          Length = 245

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 14  FFSCFRVELKNLCIGLNVRV-PEDTVTKVINGKIVAL-CKLTTVDKGK 59
           F    + EL+ +C GLNV V P     +   GK+ +  C + T++K K
Sbjct: 139 FLKVNQEELRTMCHGLNVHVLPFFKFYRGAEGKVCSFSCTIATINKFK 186


>At2g24650.1 68415.m02944 transcriptional factor B3 family protein
          low similarity to reproductive meristem gene 1 from
          [Brassica oleracea var. botrytis] GI:3170424,
          [Arabidopsis thaliana] GI:13604227; contains Pfam
          profile PF02362: B3 DNA binding domain
          Length = 1440

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/39 (35%), Positives = 21/39 (53%)

Query: 30 NVRVPEDTVTKVINGKIVALCKLTTVDKGKMFTLGDKAI 68
          ++ +PED  ++ I G+ VA  KL   DK     L D+ I
Sbjct: 21 HLMIPEDFFSEYIEGRSVAELKLDFSDKSWEVKLSDRRI 59


>At5g49000.1 68418.m06062 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 372

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 13/29 (44%), Positives = 15/29 (51%)

Query: 45  KIVALCKLTTVDKGKMFTLGDKAIPCLGN 73
           K+ + C       GKM  L DK IPC GN
Sbjct: 297 KLASSCVKLADYGGKMALLWDKYIPCSGN 325


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.324    0.141    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,675,078
Number of Sequences: 28952
Number of extensions: 145465
Number of successful extensions: 282
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 276
Number of HSP's gapped (non-prelim): 10
length of query: 158
length of database: 12,070,560
effective HSP length: 75
effective length of query: 83
effective length of database: 9,899,160
effective search space: 821630280
effective search space used: 821630280
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 56 (26.6 bits)