GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001854-TA|BGIBMGA001854-PA|undefined
         (350 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    27   0.27 
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   5.8  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   5.8  

>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 26.6 bits (56), Expect = 0.27
 Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 3/109 (2%)

Query: 150 YNLKDQ-YQEVYAPRLNYALSVKTVESENNYQGLFSKLT-AVGISVKEAEEIVTTLGEYD 207
           ++L+ Q +Q++ A      L+  TV S +     F  LT  VGI+    + + T    + 
Sbjct: 32  FSLEHQLWQKIQAWTYLILLTTWTVISASTRIKSFKFLTIGVGITTDTIDRVFTVAIPFV 91

Query: 208 GILSLGPLKDLKMDFVENNFSICELFTKTKNVQSCFHRASDILGCSLYL 256
           GI +   L   K   + NNF   +   KT++ +   ++A  +L   LY+
Sbjct: 92  GIANSCILNQDKWRLLNNNFQQIDKIFKTRDDRVKVYQA-PVLQLFLYI 139


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 279 PGARGIICGGKGTGKSTMLRYL 300
           PG    I G  G GK+T+L  L
Sbjct: 103 PGELLAILGSSGAGKTTLLNTL 124


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 279 PGARGIICGGKGTGKSTMLRYL 300
           PG    I G  G GK+T+L  L
Sbjct: 103 PGELLAILGSSGAGKTTLLNTL 124


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.136    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,226
Number of Sequences: 317
Number of extensions: 3407
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 3
length of query: 350
length of database: 114,650
effective HSP length: 57
effective length of query: 293
effective length of database: 96,581
effective search space: 28298233
effective search space used: 28298233
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)