Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001854-TA|BGIBMGA001854-PA|undefined
(350 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|... 65 1e-11
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos... 32 0.11
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 29 0.99
SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa... 29 0.99
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 28 1.7
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 28 1.7
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 28 1.7
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 28 1.7
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 28 1.7
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 28 2.3
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 28 2.3
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 27 3.0
SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase Agn1|Schizo... 27 4.0
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 27 4.0
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 27 5.3
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 27 5.3
SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces p... 27 5.3
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|... 27 5.3
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 26 7.0
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 9.2
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 26 9.2
>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 65.3 bits (152), Expect = 1e-11
Identities = 30/68 (44%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 282 RGIICGGKGTGKSTMLRYLCNRLLD-HGPVLVIDLDPGQAEFTVAGNLSVTIVNEPLLGP 340
R ++CG KG+GKS+ RY+ NRLL + + +DLDPGQ E +G++S+ +N PL GP
Sbjct: 333 RLMVCGPKGSGKSSFSRYITNRLLQQYRHIAYLDLDPGQPEVVPSGHISLYYINSPLQGP 392
Query: 341 NFTHLKTP 348
F + P
Sbjct: 393 VFARMLFP 400
>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
Caf16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 32.3 bits (70), Expect = 0.11
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 280 GARGIICGGKGTGKSTMLRYLCNR-LLDHGPVLVIDLDPGQAEFTVAGNLSVTIVNEPLL 338
G+R ++ G G GKST+L+ L + L G + V DP + + L VN P++
Sbjct: 30 GSRTLLVGANGAGKSTLLKLLSGKSLAKAGHISVGGKDPFRESSSAFVYLGTEWVNNPVI 89
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 29.1 bits (62), Expect = 0.99
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 274 TYGTDPGARGIICGGKGTGKSTMLRYLCNRLL 305
++G D +R I G GTGKST+L + L+
Sbjct: 410 SFGIDMDSRVAIVGKNGTGKSTLLNLITGLLI 441
>SPAC4D7.09 |tif223||translation initiation factor
eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 468
Score = 29.1 bits (62), Expect = 0.99
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 121 VFVLKHPAILYFHGKVTMRALGGQMEVFGYNLKDQYQEVYAPRLNYALSVKTVESENNYQ 180
+FV KH I K ++ ++ G ++ Y +K QYQ+ + R N + + + +NY
Sbjct: 252 IFVFKHWVIDLIREKESISSIRG--DLIPYLVKCQYQKSFTVRENIQRFLSSPNNIDNYD 309
Query: 181 G 181
G
Sbjct: 310 G 310
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 28.3 bits (60), Expect = 1.7
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 248 DILGCSLYLKRPLRTYEERPQW--EQAYTYGTDPGARGIICGGKGTGKSTMLRYLCNR 303
D+ GC ++R LR E P E+ G DP ++ G GTGK+ R + NR
Sbjct: 180 DVGGCKEQIER-LREVVELPLLSPERFVKLGIDPPKGIMLYGPPGTGKTLCARAVANR 236
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 28.3 bits (60), Expect = 1.7
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 57 ELGDVAVIDELEVETNPETLTEIASIAVDETMPSENISNEEDSVDFT 103
EL ++ V E + N +T+ +A T E++ N+E+++DF+
Sbjct: 8 ELENMQVESEAKTSENDQTIDTKVDVADVTTHVDEDLDNKEEALDFS 54
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 28.3 bits (60), Expect = 1.7
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 237 KNVQSCFHRASDILGCSLYLKRPLRTYEER 266
K++ + F + D+L S Y+++P+R Y E+
Sbjct: 663 KSMTTSFMMSQDVLNFSSYMRKPIRDYLEK 692
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 28.3 bits (60), Expect = 1.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 280 GARGIICGGKGTGKSTMLRYLCNRLLDHGP 309
G R +CG G+GKST++R + N ++ P
Sbjct: 460 GRRYGLCGPNGSGKSTLMRAIVNGQVEGFP 489
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 28.3 bits (60), Expect = 1.7
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 150 YNLKDQYQEVYAPRLNYALSVKTVESENNYQGLFSKLTAVGISVKEAEEIVTTL 203
Y ++ VY LSV + E ++QG + + +GI+ E +EI L
Sbjct: 249 YGIQGPENYVYTSACQ-CLSVDGISDEKDFQGTMNAMKVIGITEPEQDEIFRML 301
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 27.9 bits (59), Expect = 2.3
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 154 DQYQEVYAPRLNYALSVKTVESENNYQGLFSKLTAVGISVKEAE 197
D+ + ++AP + LS E NN + L ++L A+ +K+AE
Sbjct: 611 DEEEVLFAPPGDLQLSESIDELNNNIEELKAQLNAINTLIKKAE 654
>SPCC132.01c ||SPCC1322.17c|DUF814 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1021
Score = 27.9 bits (59), Expect = 2.3
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 191 ISVKEAEEIVTTLGEYDGILSLGPLKDLKMDFVENNFSICELFTKTKNVQSCFHRASDIL 250
+S+++A + LGEY L L+ K+D + +C TK ++ + F A IL
Sbjct: 221 VSLRKA--LTIRLGEYGNALIEHCLRRSKLDPLFPACQLCADETKKNDLLAAFQEADSIL 278
Query: 251 GCSLYLKRPLRTYEERPQWEQAYTYGTDP 279
+ K P++ Y EQA T DP
Sbjct: 279 --AAVNKPPVKGYIF--SLEQALTNAADP 303
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 27.5 bits (58), Expect = 3.0
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 10/68 (14%)
Query: 57 ELGDVAVIDELEVETNPETLTEIASI-----AVDETMPSENISNEEDSV----DFTNKPN 107
EL D+++ ++ + TL+EI+ I A++ + S+ NE+ + DFT P+
Sbjct: 284 ELSDLSLSSQI-LYPESTTLSEISPIYDSELAIENILESKCFENEQAIIEGVKDFTEFPD 342
Query: 108 LDSVQIYY 115
L+ QI Y
Sbjct: 343 LEETQIIY 350
>SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase
Agn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 424
Score = 27.1 bits (57), Expect = 4.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 127 PAILYFHGKVTMRALGGQMEVFGYN 151
P LY+ GKV + G+ + FGY+
Sbjct: 113 PNQLYYDGKVFVSTFAGETDTFGYS 137
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 27.1 bits (57), Expect = 4.0
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 279 PGARGIICGGKGTGKSTMLRYLC 301
PG+ ++ G +G+G ST+L+ LC
Sbjct: 101 PGSSLLVLGHEGSGGSTLLKALC 123
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 26.6 bits (56), Expect = 5.3
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 184 SKLTAVGISVKEAEEIVTTLGEYDGILSLGPLKDLKMDFVENNFSICELFTK-----TKN 238
SK+ V + ++ + D G L MD+ E S+C LF K TK
Sbjct: 299 SKIKNVDVPASSYSSPISKVSPSDVTEEDGSLFFFWMDYTEMYGSLC-LFGKVYDKATKQ 357
Query: 239 VQSCFHRASDILGCSLYLKRP 259
SCF + I+ +L RP
Sbjct: 358 YVSCFLKVDGIMRSLYFLPRP 378
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 26.6 bits (56), Expect = 5.3
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 106 PNLDSVQIYYGTKHCVFVLKHPAILYFHGKVTMRALGGQMEVFGY 150
P +IYYG C LK PA YF K + +GG V GY
Sbjct: 265 PKWSKRRIYYGRDRCAVGLKQPA--YF-SKGQVGVVGG-YPVMGY 305
>SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 26.6 bits (56), Expect = 5.3
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 205 EYDGILSLGP--LKDLKMDFVENNFSICELF--TKTKNVQSCFHRASDILGCSLYLKRPL 260
E+ G++ P KDL + E + E F KT+ ++CF +S LGC L L
Sbjct: 203 EFSGVVESIPQSTKDLLRIWKEAKIQMHEDFRCNKTEFNEACFDASSSRLGC--ILMDGL 260
Query: 261 RTYEERPQWEQAYT 274
T+ + + E+ YT
Sbjct: 261 STFYWQLRLERGYT 274
>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 89 PSENISNEEDSVDFTNKPNLDS 110
PSE+ SN ED D N P++ S
Sbjct: 69 PSEHSSNGEDDKDINNPPSMPS 90
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 26.2 bits (55), Expect = 7.0
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 283 GIICGGKGTGKSTM----LRYLCNRLLDHGPVLVI 313
GI+ G GK+ L YL + L HGP LV+
Sbjct: 396 GILADEMGLGKTVQTVAFLSYLAHSLRQHGPFLVV 430
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.8 bits (54), Expect = 9.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 113 IYYGTKHCVFVLKHPAILYFHGKVTMRA 140
IYYG + ++VL + A Y +G+ +M A
Sbjct: 487 IYYGDEQGLYVLDNSANNYLYGRQSMAA 514
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 25.8 bits (54), Expect = 9.2
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 274 TYGTDPGARGIICGGKGTGKSTMLRYLCNRL-LDHGPVLV 312
++ GA+ G G GKST+LR L D G +L+
Sbjct: 463 SFNIPAGAKVAFVGASGCGKSTILRLLFRFYDTDSGKILI 502
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.136 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,634,052
Number of Sequences: 5004
Number of extensions: 67961
Number of successful extensions: 243
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 228
Number of HSP's gapped (non-prelim): 23
length of query: 350
length of database: 2,362,478
effective HSP length: 73
effective length of query: 277
effective length of database: 1,997,186
effective search space: 553220522
effective search space used: 553220522
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 54 (25.8 bits)
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