GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001854-TA|BGIBMGA001854-PA|undefined
         (350 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17925| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.2  
SB_11520| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   4.3  
SB_216| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   5.6  
SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17)                  29   7.5  
SB_11721| Best HMM Match : Peptidase_C12 (HMM E-Value=0)               28   9.9  
SB_9909| Best HMM Match : AAA (HMM E-Value=0)                          28   9.9  
SB_46753| Best HMM Match : Fimbrial_CS1 (HMM E-Value=1.1)              28   9.9  
SB_28063| Best HMM Match : ABC_tran (HMM E-Value=0)                    28   9.9  

>SB_17925| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1075

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 17/54 (31%), Positives = 24/54 (44%)

Query: 285 ICGGKGTGKSTMLRYLCNRLLDHGPVLVIDLDPGQAEFTVAGNLSVTIVNEPLL 338
           I G  G GKS++L  L       G VL+  +D G  +   A      I  +P+L
Sbjct: 865 IAGRTGAGKSSLLAALFRMPEPGGEVLIDGIDLGTIDIQAARRAMAVITQDPVL 918


>SB_11520| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 215

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 12/48 (25%), Positives = 24/48 (50%)

Query: 70  ETNPETLTEIASIAVDETMPSENISNEEDSVDFTNKPNLDSVQIYYGT 117
           ETN    + I++ A++    S+ +    D   FT+K  + + + +Y T
Sbjct: 61  ETNYSRFSRISNRALNRMYSSDTLGTARDMASFTSKSRIKAYKTFYST 108


>SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 129 ILYFHGKVTMRALGGQMEVFGYNLKDQYQEVYAPRLNYALSVKTVESENNYQGLFSK 185
           I+  H K+  R   G +E+      D Y  V+ P  NY  ++KT ES    Q L +K
Sbjct: 102 IVCLHRKLRQR---GPLELGDIEDLDGYPTVFCPWHNYDFNLKTGESSTGLQDLAAK 155


>SB_216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1315

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 17/61 (27%), Positives = 27/61 (44%)

Query: 278  DPGARGIICGGKGTGKSTMLRYLCNRLLDHGPVLVIDLDPGQAEFTVAGNLSVTIVNEPL 337
            DP  +  I G  G GKS+++  L       G VL+  +D G  +   A      +  EP+
Sbjct: 1100 DPKEKIGIVGRTGAGKSSLVAALFRMPEPKGRVLIDGVDLGNLDIQAARRAIAVVTQEPV 1159

Query: 338  L 338
            +
Sbjct: 1160 V 1160


>SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17)
          Length = 1440

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 56   PELGDVAVIDELEVETNPETLTEIASIAVDETMPSENISNEE-DSVDFTNKPN 107
            PE+ D     + E ET PET  E+ S       P   I +++ D  D T  PN
Sbjct: 1094 PEVEDPQEEADTETETEPETAEEVESDEPLPPPPPPPIPDDDGDDTDSTQLPN 1146


>SB_11721| Best HMM Match : Peptidase_C12 (HMM E-Value=0)
          Length = 537

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 14/45 (31%), Positives = 23/45 (51%)

Query: 59  GDVAVIDELEVETNPETLTEIASIAVDETMPSENISNEEDSVDFT 103
           G  A + +LE E+ PE+   +++   DET  +      ED  D+T
Sbjct: 342 GVAAGVGDLEKESQPESPISVSTGVPDETGETTETCPSEDQQDYT 386


>SB_9909| Best HMM Match : AAA (HMM E-Value=0)
          Length = 400

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 247 SDILGCSLYLKRPLRTYEERPQW--EQAYTYGTDPGARGIICGGKGTGKSTMLRYLCNR 303
           SDI GC   + + LR   E P    E+    G +P    ++ G  GTGK+   R + NR
Sbjct: 84  SDIGGCKEQIDK-LREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANR 141


>SB_46753| Best HMM Match : Fimbrial_CS1 (HMM E-Value=1.1)
          Length = 982

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 77  TEIASIAVDETMPSENISNEEDSVDFTNKPNLD 109
           TE   +  DE   SE   +EE+SVDF + P  +
Sbjct: 648 TEEEEMEEDENWASEGSPSEEESVDFDDDPEFE 680


>SB_28063| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1238

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 17/54 (31%), Positives = 24/54 (44%)

Query: 285  ICGGKGTGKSTMLRYLCNRLLDHGPVLVIDLDPGQAEFTVAGNLSVTIVNEPLL 338
            I G  G GKS+++  L       G VL+  +D G  +   A      I  EP+L
Sbjct: 1027 IVGRTGAGKSSLVAALFRMPEPKGRVLIDGVDLGTLDIQSARKAMAVITQEPVL 1080


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.136    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,597,846
Number of Sequences: 59808
Number of extensions: 464406
Number of successful extensions: 950
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 943
Number of HSP's gapped (non-prelim): 10
length of query: 350
length of database: 16,821,457
effective HSP length: 83
effective length of query: 267
effective length of database: 11,857,393
effective search space: 3165923931
effective search space used: 3165923931
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)