GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001854-TA|BGIBMGA001854-PA|undefined
         (350 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83114-1|CAB63234.1|  549|Caenorhabditis elegans Hypothetical pr...    56   4e-08
Z34801-6|CAA84329.1|  428|Caenorhabditis elegans Hypothetical pr...    36   0.043
Z82059-12|CAB04880.1|  622|Caenorhabditis elegans Hypothetical p...    31   1.2  
U20783-1|AAC46845.1|  535|Caenorhabditis elegans unknown protein.      31   1.2  
AL032665-2|CAA21772.1|  622|Caenorhabditis elegans Hypothetical ...    31   1.2  
AY818713-1|AAX35669.1|  691|Caenorhabditis elegans LIN-65S protein.    29   3.7  
AY818712-1|AAX35668.1|  728|Caenorhabditis elegans LIN-65L protein.    29   3.7  
AC025726-22|AAN73851.2|  512|Caenorhabditis elegans Abnormal cel...    29   3.7  
AC025726-21|AAK73935.3|  728|Caenorhabditis elegans Abnormal cel...    29   3.7  
Z78012-4|CAB01414.1|  435|Caenorhabditis elegans Hypothetical pr...    28   8.6  
Z77666-6|CAB01232.1| 1321|Caenorhabditis elegans Hypothetical pr...    28   8.6  
Z75537-2|CAA99835.1|  622|Caenorhabditis elegans Hypothetical pr...    28   8.6  
X65054-1|CAA46190.1| 1321|Caenorhabditis elegans P-glycoprotein ...    28   8.6  
U40412-4|AAV28342.1|  618|Caenorhabditis elegans Hypothetical pr...    28   8.6  
L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore nu...    28   8.6  
AL023828-5|CAA19450.1|  260|Caenorhabditis elegans Hypothetical ...    28   8.6  

>Z83114-1|CAB63234.1|  549|Caenorhabditis elegans Hypothetical
           protein K09B11.2 protein.
          Length = 549

 Score = 56.0 bits (129), Expect = 4e-08
 Identities = 60/238 (25%), Positives = 103/238 (43%), Gaps = 18/238 (7%)

Query: 121 VFVLKHPAILYFHGKVTMRALGGQMEVFGYNL------KDQYQEVYAP-RLNYALSVKTV 173
           ++V++    L   G  +   L G   +  YNL         + ++ AP R++    ++  
Sbjct: 16  IYVVQPGERLSIFGSCSFLCLAGNASINDYNLPAVSCESSNFMKISAPQRMDVPAILQVF 75

Query: 174 ESENNYQGLFSKLTAVGISVKEAEEIVTTLGEYD-GILSLGPLKDLKMDFVE---NNFSI 229
           +S  +Y+    K     ++ K  E+I+  +G  +  +     + D   + V    +NF I
Sbjct: 76  KSGPSYKHARLKFRLKEVAPKNYEKIMEMIGTTEPSVFIFSKILDFAEETVSGVVSNFLI 135

Query: 230 CELFTKTKNVQSCFHRASDILGCSLYLKRPLRTYEERPQWEQAYTYGTDPGARGII-CGG 288
                K   +   F  + D     +Y ++  +  + + Q  +      D     I+  G 
Sbjct: 136 HSSIQKQIILPPHFFISRDDF--IIYPQQ--QEAQLKSQMNRLNKLRNDGQRTTILPIGH 191

Query: 289 KGTGKSTMLRYLCNRLLDHG--PVLVIDLDPGQAEFTVAGNLSVTIVNEPLLGPNFTH 344
           KG GKS ++R L NR L +G   V V+D D GQ+EFT  G LS+T V  P+LG    H
Sbjct: 192 KGAGKSNLMRSLVNRCLSNGYEHVYVLDCDIGQSEFTPCGCLSLTKVTSPILGKPHGH 249


>Z34801-6|CAA84329.1|  428|Caenorhabditis elegans Hypothetical
           protein F59A2.4a protein.
          Length = 428

 Score = 35.9 bits (79), Expect = 0.043
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 280 GARGIICGGKGTGKSTMLRYLCNRLLDHGPV-LVIDLDPGQAEFTVAGNLSVTIVNE 335
           G R ++ G    GK+T+ R LCN  +  G   + ++LD GQ   +V G ++  +V +
Sbjct: 114 GPRLLLVGPTDVGKTTVSRILCNYSVRQGRTPIFVELDVGQNSVSVPGTVAAVLVQK 170


>Z82059-12|CAB04880.1|  622|Caenorhabditis elegans Hypothetical
           protein T27E9.7 protein.
          Length = 622

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 263 YEERPQW-EQAYTYGTDPGARGIICGGKGTGKSTMLRYLCNRLL 305
           Y E   W  +   +G D   R  + G  G GKST+L+ LC  ++
Sbjct: 403 YNENTPWIYKDIDFGIDLDTRIALVGPNGAGKSTLLKLLCTDVM 446


>U20783-1|AAC46845.1|  535|Caenorhabditis elegans unknown protein.
          Length = 535

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 263 YEERPQW-EQAYTYGTDPGARGIICGGKGTGKSTMLRYLCNRLL 305
           Y E   W  +   +G D   R  + G  G GKST+L+ LC  ++
Sbjct: 402 YNENTPWIYKDIDFGIDLDTRIALVGPNGAGKSTLLKLLCTDVM 445


>AL032665-2|CAA21772.1|  622|Caenorhabditis elegans Hypothetical
           protein T27E9.7 protein.
          Length = 622

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 263 YEERPQW-EQAYTYGTDPGARGIICGGKGTGKSTMLRYLCNRLL 305
           Y E   W  +   +G D   R  + G  G GKST+L+ LC  ++
Sbjct: 403 YNENTPWIYKDIDFGIDLDTRIALVGPNGAGKSTLLKLLCTDVM 446


>AY818713-1|AAX35669.1|  691|Caenorhabditis elegans LIN-65S protein.
          Length = 691

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 194 KEAEEIVTTL-GEYDGILSLGPLKDLKMDFVENNFSICELFTKTKNV 239
           + A E++T L G +D  LSL  L+ +++  V NN  + E+F + + V
Sbjct: 269 QNAIELLTRLYGSWDAQLSLSNLETIRLLGVNNNRKLIEIFEENEQV 315


>AY818712-1|AAX35668.1|  728|Caenorhabditis elegans LIN-65L protein.
          Length = 728

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 194 KEAEEIVTTL-GEYDGILSLGPLKDLKMDFVENNFSICELFTKTKNV 239
           + A E++T L G +D  LSL  L+ +++  V NN  + E+F + + V
Sbjct: 306 QNAIELLTRLYGSWDAQLSLSNLETIRLLGVNNNRKLIEIFEENEQV 352


>AC025726-22|AAN73851.2|  512|Caenorhabditis elegans Abnormal cell
           lineage protein 65,isoform b protein.
          Length = 512

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 194 KEAEEIVTTL-GEYDGILSLGPLKDLKMDFVENNFSICELFTKTKNV 239
           + A E++T L G +D  LSL  L+ +++  V NN  + E+F + + V
Sbjct: 306 QNAIELLTRLYGSWDAQLSLSNLETIRLLGVNNNRKLIEIFEENEQV 352


>AC025726-21|AAK73935.3|  728|Caenorhabditis elegans Abnormal cell
           lineage protein 65,isoform a protein.
          Length = 728

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 194 KEAEEIVTTL-GEYDGILSLGPLKDLKMDFVENNFSICELFTKTKNV 239
           + A E++T L G +D  LSL  L+ +++  V NN  + E+F + + V
Sbjct: 306 QNAIELLTRLYGSWDAQLSLSNLETIRLLGVNNNRKLIEIFEENEQV 352


>Z78012-4|CAB01414.1|  435|Caenorhabditis elegans Hypothetical
           protein C52E4.4 protein.
          Length = 435

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 247 SDILGCSLYLKRPLRTYEERPQW--EQAYTYGTDPGARGIICGGKGTGKSTMLRYLCNR 303
           SD+ GC   +++ LR   E P    E+    G +P    ++ G  GTGK+   R + NR
Sbjct: 177 SDVGGCKDQIEK-LREVVETPLLHPERYVNLGIEPPKGVLLYGPPGTGKTLCARAVANR 234


>Z77666-6|CAB01232.1| 1321|Caenorhabditis elegans Hypothetical protein
            K08E7.9 protein.
          Length = 1321

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 263  YEERPQWE--QAYTYGTDPGARGIICGGKGTGKSTMLRYL 300
            Y ERP+ E  +  ++  +PG    + G  G GKST++  L
Sbjct: 1086 YPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALL 1125


>Z75537-2|CAA99835.1|  622|Caenorhabditis elegans Hypothetical
           protein F18E2.2 protein.
          Length = 622

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 275 YGTDPGARGIICGGKGTGKSTMLRYLCNRL 304
           +G D  +R  I G  G GKST+L+ L  ++
Sbjct: 425 FGVDMDSRIAIVGPNGVGKSTLLKLLIGKI 454


>X65054-1|CAA46190.1| 1321|Caenorhabditis elegans P-glycoprotein A
            protein.
          Length = 1321

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 263  YEERPQWE--QAYTYGTDPGARGIICGGKGTGKSTMLRYL 300
            Y ERP+ E  +  ++  +PG    + G  G GKST++  L
Sbjct: 1086 YPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALL 1125


>U40412-4|AAV28342.1|  618|Caenorhabditis elegans Hypothetical
           protein F46G11.1 protein.
          Length = 618

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)

Query: 273 YTYGTDPGARGIICGGKGTGKSTMLRYLCNRLLD 306
           Y  G  PG   ++ GG G GK+T   +LC   LD
Sbjct: 317 YLGGLRPGEMTVLTGGTGNGKTT---FLCEYSLD 347


>L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore null
           protein 1 protein.
          Length = 1010

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 60  DVAVIDELEVETNPETLTEIASIAVDETMPSENISNEED 98
           D  ++ E  VET  +    I S+ +D+T+   N +N+ED
Sbjct: 132 DPTLLYEKIVETTTKVTERIVSMPLDDTLAMFNTTNQED 170


>AL023828-5|CAA19450.1|  260|Caenorhabditis elegans Hypothetical
           protein Y17G7B.3 protein.
          Length = 260

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/38 (31%), Positives = 23/38 (60%)

Query: 185 KLTAVGISVKEAEEIVTTLGEYDGILSLGPLKDLKMDF 222
           K T   + V+E+EEI  ++G  D ++ +  L+++K  F
Sbjct: 223 KATNPFMRVRESEEIQKSIGTCDAVVGMAKLREMKNKF 260


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.136    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,633,756
Number of Sequences: 27539
Number of extensions: 355523
Number of successful extensions: 897
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 884
Number of HSP's gapped (non-prelim): 21
length of query: 350
length of database: 12,573,161
effective HSP length: 82
effective length of query: 268
effective length of database: 10,314,963
effective search space: 2764410084
effective search space used: 2764410084
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)